PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G058400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 23974.3 Da PI: 7.5762 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.9 | 3.8e-29 | 2 | 101 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C++lr++C++dC+l++++ p++q++++ +v+k+FG++ ++++++++p ++r+ +++sl++eA r+ +Pv+Gavg+++++++ Manes.07G058400.1.p 2 SCNGCRILRKGCSDDCMLRQCLqgiddPQAQANATVFVAKFFGRAGLISFISSVPVHQRPSLFQSLLFEAVGRTVNPVSGAVGLLWTGNW 91 6***************************************************************************************** PP DUF260 86 qleqlkaela 95 +++q+++ ++ Manes.07G058400.1.p 92 HVCQTAVMTV 101 ****987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.399 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-25 | 2 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSCNGCRILR KGCSDDCMLR QCLQGIDDPQ AQANATVFVA KFFGRAGLIS FISSVPVHQR 60 PSLFQSLLFE AVGRTVNPVS GAVGLLWTGN WHVCQTAVMT VLRGGAIEPM LDFDGRMLGQ 120 NLDNFSECSK FKPRNVSSGS KTTRTTTLKM KRSGDDDDES KCELTNLDLC LMYPTEKKLR 180 ATTPSEEESE TTTLVSGGST SAGTNCSLQG GERKLWPLFI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G058400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021617841.1 | 1e-163 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 1e-57 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2C9VIV7 | 1e-161 | A0A2C9VIV7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029484m | 1e-162 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-58 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G058400.1.p |