PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G048600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 349aa    MW: 39038.9 Da    PI: 7.2382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G048600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12169216355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Manes.07G048600.1.p 169 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 216
                          6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.044166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-17168231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10169216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-17170228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.70E-12171220No hitNo description
SMARTSM003531.2E-14172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MFSPMEISSI SGLSELEMED PIFIEQWPMN SIDDLSLQSL VAAFGENMQH SLSHHPNFNL  60
KTSMETSATA IVRPSKQLKP NGFNSIKTTE YNLPNPQADF YPNILSFANS TNLNQMGIVK  120
PKEEAVCSTR INAFPSDMVI SPGNQNHVFK ACDGAKRISN NSSRYSQTQD HIIAERKRRE  180
KLSQRFIALS AIVPGLKKMD KASVLGDAIK YLKQLQERVK TLEEQTKKKT MESVVIVKKS  240
QLLLSEDESF SSDESFSKGP IDEPLPEIEA RICDKQVLIR IHCEKRKGVV EKTVAEIEKL  300
HLTVVNSSIL TFGSSALDVT IIAQMDMEFV MSVKDLVKNL HSAFKLFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14170219857Transcription factor MYC2
5gnj_B3e-14170219857Transcription factor MYC2
5gnj_E3e-14170219857Transcription factor MYC2
5gnj_F3e-14170219857Transcription factor MYC2
5gnj_G3e-14170219857Transcription factor MYC2
5gnj_I3e-14170219857Transcription factor MYC2
5gnj_M3e-14170219857Transcription factor MYC2
5gnj_N3e-14170219857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERKRRE
2175180RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G048600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617764.10.0transcription factor bHLH18-like
TrEMBLA0A2C9VK650.0A0A2C9VK65_MANES; Uncharacterized protein
STRINGcassava4.1_011057m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-62bHLH family protein