PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G041300.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 297aa    MW: 31399.9 Da    PI: 5.059
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G041300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.14.3e-17217252134
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++Cgt++  Tp++Rrgp g++tLCnaCGl+++ kg
  Manes.07G041300.2.p 217 CTHCGTSSksTPMMRRGPAGPRTLCNACGLKWANKG 252
                          ********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.2E-1077112IPR010399Tify domain
PROSITE profilePS5132013.97777112IPR010399Tify domain
PfamPF062003.8E-1282111IPR010399Tify domain
PROSITE profilePS5101713.275144186IPR010402CCT domain
PfamPF062032.4E-16144186IPR010402CCT domain
PROSITE profilePS501149.236211259IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-11211264IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.66E-12214264No hitNo description
Gene3DG3DSA:3.30.50.107.7E-16215258IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.69E-16216259No hitNo description
PROSITE patternPS003440217244IPR000679Zinc finger, GATA-type
PfamPF003209.4E-15217252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MPNSNIQAPL HTAEQMKIQT QLEEEEDEDI AGGGEESIDN PNIHYENGTG NAGGVDSFPP  60
DDICLTGGQD YPPAVGNGGD ADQLTLSFQG EVYVFDAVSP DKVQAVLLLL GGYEIPSGVP  120
TAGAVPLNPS GPSDLPGRSI QHQRAASLHR FREKRKERCF DKKIRYNVRK EVALRMQRKK  180
GQFTSSKANS DGAGAASSGW NVTQGSGQDD SMLETSCTHC GTSSKSTPMM RRGPAGPRTL  240
CNACGLKWAN KGILRDLSKV SSMDLQGPPA KSTEKSEDEA KGIDAVAIAT DIAAPV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G041300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618777.10.0GATA transcription factor 28-like isoform X2
SwissprotQ8H1G03e-77GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A251KH090.0A0A251KH09_MANES; Uncharacterized protein
STRINGcassava4.1_012906m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-71ZIM-like 1