PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G039300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24425.6 Da    PI: 7.6698
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G039300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.61.9e-191662349
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         i  +sn  vtfskRr g++KKA+EL +LC+ae+a+i+fs++ k++ +
  Manes.07G039300.1.p 16 ITKESNLLVTFSKRRYGVFKKASELATLCGAEIAIIVFSPSMKVFSF 62
                         77889999*********************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.623666IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-26665IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-23776IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-16828IPR002100Transcription factor, MADS-box
PfamPF003197.5E-221562IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MARQSKGRRK LDIVKITKES NLLVTFSKRR YGVFKKASEL ATLCGAEIAI IVFSPSMKVF  60
SFGHPSVETV IDRFFSGNST QTSGVLQLAK IHRNARVRDL NLQLTQVTTQ LDEEKKRGEE  120
LDQGNKAGDG YRWWESPVEE LDLPKLEHLK ASFEMLRENV TKRVEELLIQ TTNHTQFYNP  180
NSAPVNEALP TDPNNDVFDE SLVYNLGFQN GNGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-14783177Myocyte-specific enhancer factor 2A
3kov_B2e-14783177Myocyte-specific enhancer factor 2A
3kov_I2e-14783177Myocyte-specific enhancer factor 2A
3kov_J2e-14783177Myocyte-specific enhancer factor 2A
3p57_A2e-14783177Myocyte-specific enhancer factor 2A
3p57_B2e-14783177Myocyte-specific enhancer factor 2A
3p57_C2e-14783177Myocyte-specific enhancer factor 2A
3p57_D2e-14783177Myocyte-specific enhancer factor 2A
3p57_I2e-14783177Myocyte-specific enhancer factor 2A
3p57_J2e-14783177Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G039300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617252.11e-160agamous-like MADS-box protein AGL62
TrEMBLA0A2C9VIB91e-158A0A2C9VIB9_MANES; Uncharacterized protein
STRINGcassava4.1_032515m1e-159(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-49AGAMOUS-like 62