PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G036500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24765.3 Da PI: 9.8522 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.7 | 1e-20 | 16 | 62 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+ +sn vtfskRr g++KKA+ELS+LC+ae+ +i+fs+t k++ + Manes.07G036500.1.p 16 ISKESNLLVTFSKRRYGVFKKASELSILCGAEITIIVFSPTMKVFSF 62 8999*************************************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-27 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.577 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.88E-31 | 7 | 75 | No hit | No description |
SuperFamily | SSF55455 | 1.03E-23 | 7 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-17 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-21 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-17 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-17 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGRQSKGRRK LEIVKISKES NLLVTFSKRR YGVFKKASEL SILCGAEITI IVFSPTMKVF 60 SFGHPSVETV IDRFLYGNST QTSGVLQLVQ THRNARVRDL NLQLTQVTTQ LNEEKKRGEK 120 LDQGRKAGDG QHWWESPIEE LDLPKLEQLK TSLEILRENV AKRVEELLIQ TTNHTQFYNN 180 PNLAPVHEAL PFDPNNKVID PNMIYDLGFP NRNGFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-15 | 7 | 74 | 2 | 69 | MEF2C |
5f28_B | 8e-15 | 7 | 74 | 2 | 69 | MEF2C |
5f28_C | 8e-15 | 7 | 74 | 2 | 69 | MEF2C |
5f28_D | 8e-15 | 7 | 74 | 2 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G036500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021618803.1 | 1e-160 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 4e-50 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2C9VJU3 | 1e-158 | A0A2C9VJU3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021928m | 1e-159 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-47 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G036500.1.p |
Publications ? help Back to Top | |||
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