PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G031000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 291aa    MW: 32005.3 Da    PI: 8.3358
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G031000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.84.6e-3267124260
          ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                          + vrY+eClkNhAa++Gg+a+DGCgEfmps geeg+++al+C+AC+CHRnFHR+e e e
  Manes.07G031000.1.p  67 KMVRYRECLKNHAAAMGGNATDGCGEFMPS-GEEGSIEALTCSACNCHRNFHRKEIEGE 124
                          679**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2669127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.4E-2969121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-3170121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.61271120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.0E-30204274IPR009057Homeodomain-like
SuperFamilySSF466893.09E-19211273IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-27212268IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MELSSHEGEI PMPINSSYGG GHGHMIHHDH PAPHNHIISS SAPQMPSNNG PSSIPSPLED  60
HHAPFKKMVR YRECLKNHAA AMGGNATDGC GEFMPSGEEG SIEALTCSAC NCHRNFHRKE  120
IEGEASSCDY FHGHPHFSRV GRKVILGHHK NILAPEALGF HTAAGTLVPS RSAAAPHHQM  180
IMSYNMGSLP SESDEQEDGG GVMMARPAQL VKKRFRTKFT QEQKEKMLNF AEKVGWKIQK  240
QEESVVQQFC QEIGVKRRVL KVWMHNNKHN LAKKNPPPPP PPLPPIATTT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-242132701875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G031000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617744.10.0zinc-finger homeodomain protein 4-like
SwissprotQ9M9S09e-77ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2C9VI040.0A0A2C9VI04_MANES; Uncharacterized protein
STRINGcassava4.1_013112m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-76homeobox protein 31