PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G022400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | TCP | ||||||||
Protein Properties | Length: 551aa MW: 56832.2 Da PI: 8.1841 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.3 | 4.4e-41 | 154 | 259 | 2 | 113 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl+qa+pai+++tgt++++a+++ ++s +ss+s+ s++ Manes.07G022400.1.p 154 TPAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLRQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAP-- 241 789******************************************************************9998888888888744444.. PP TCP 91 aksaakskksqksaasalnlake 113 +sk++++s + al+la++ Manes.07G022400.1.p 242 -----PSKSAPHSFHGALALAHH 259 .....333334444444444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.0E-39 | 159 | 285 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.426 | 160 | 214 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MEITDMQSNK QNNTTQEPHQ SHHQRHHHHH HHQVSFDGRS SGGGPSPGPF MGSISIQAGL 60 SHAAHHVHQH HGLASSAPTT TGSAPSTSSS SLSPPSSTST STSSAAAPPQ LVDASLAIAT 120 RSGPVLDSTK KNQQQNLSVV TTTSTATTTA LTATPAKRST KDRHTKVDGR GRRIRMPATC 180 AARVFQLTRE LGHKSDGETI EWLLRQAEPA IIAATGTGTI PANFSTLNVS LRSSGSTLSA 240 PPSKSAPHSF HGALALAHHP HYEEGFSHTT LLGFHHQQQQ HLMTADQIAE ALPGGSAGGG 300 GGGSGGGAGE DSSENYMRKR FREDLFKDDS QQQQGESGSG GGGGGTSGGG GAGTGGGSPG 360 KGFKSGLQLP KPQQHDTGSS GLLRPSNILP PTAMWAMAPA PSSGSTIWMV PVTAGGAGGG 420 PAITTTTTGA GPSEPQPQMW PFSTATPASG NSLQAPLHFV PRFNLPSNLE FQGGRGNALQ 480 LGSMLMQQQP SQHIGLSMAD SNLGMLAALN AYSRGGLNMN SQQNNPLNQH HQHQQPQDTN 540 SGDEDPNSSQ * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G022400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021618400.1 | 0.0 | transcription factor TCP8-like | ||||
TrEMBL | A0A2C9VHW3 | 0.0 | A0A2C9VHW3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_034188m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 2e-61 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G022400.1.p |