PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G021600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 114aa    MW: 13056.2 Da    PI: 10.4468
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G021600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.61.4e-1020873398
                         -SEEEEEE.TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 33 sktltled.esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         s+ + + d e++ + ++ +  ++++g+   v++kGW +Fvk+++L +gD v+F+ ++++ ++ ++k++ 
  Manes.07G021600.1.p 20 SQGIDVIDgEDNSVKKFIC-TKRHKGHhkPVFSKGWISFVKEKHLVAGDKVIFYKEEDKVGRIRFKIHA 87
                         4446666624444444555.3444444469************************777799989888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.684189IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-10477IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-9485IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-72587IPR003340B3 DNA binding domain
CDDcd100172.50E-84089No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MVFPIKSYRE VLQIQNGDLS QGIDVIDGED NSVKKFICTK RHKGHHKPVF SKGWISFVKE  60
KHLVAGDKVI FYKEEDKVGR IRFKIHAKKV PCLLFGFDLR NAIRKATYPG QQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G021600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618783.12e-50AP2/ERF and B3 domain-containing transcription factor ARF14-like
TrEMBLA0A2C9VJU22e-77A0A2C9VJU2_MANES; Uncharacterized protein
STRINGcassava4.1_030107m2e-78(Manihot esculenta)