PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.07G021500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Protein Properties

Length: 134aa MW: 15783.2 Da PI: 8.8163

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.07G021500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.4	2e-11	7	105	1	97
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvF 82 f k+lt dv r+v+p + ++ +g+ s ++ + d + + +++++ r+k + v+ kGW +Fvk+++L +gD v+F Manes.07G021500.1.p 7 FRKKLTDTDVKY--RMVVPMDNYRDAfqipEGD--FSEEIDVIDmDDDSVKKFNCSKRRK--GhpkPVFCKGWISFVKEKHLVAGDEVTF 90 778886666655..5899999998887666444..5667888884444666788844333..22469999******************** PP EE-SSSEE..EEEEE CS B3 83 kldgrsefelvvkvf 97 + +++++++ ++kv Manes.07G021500.1.p 91 YKEEDETGRIRIKVQ 105 *87779998888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.1E-15	5	102	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.65E-13	6	98	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.02E-13	6	97	No hit	No description
Pfam	PF02362	2.4E-8	7	105	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0017	7	106	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MKFEMLFRKK LTDTDVKYRM VVPMDNYRDA FQIPEGDFSE EIDVIDMDDD SVKKFNCSKR 60 RKGHPKPVFC KGWISFVKEK HLVAGDEVTF YKEEDETGRI RIKVQSQKIQ CLLFGVDLRD 120 AVRNATYFRQ QTK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.07G021500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021618783.1	8e-95	AP2/ERF and B3 domain-containing transcription factor ARF14-like
TrEMBL	A0A2C9VHS1	2e-93	A0A2C9VHS1_MANES; Uncharacterized protein
STRING	cassava4.1_026201m	3e-94	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-09	related to ABI3/VP1 1

Link Out ? help Back to Top
Phytozome	Manes.07G021500.1.p