PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G020700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 133aa MW: 15109.4 Da PI: 9.5534 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32 | 2.1e-10 | 17 | 115 | 3 | 95 |
EE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83 ++l+++ l+++ l++p + ++++ g + sk ++ d++g++We+ l r+++ + +v + W Fv + gL++gD+v+F+ Manes.07G020700.1.p 17 SKLLTKTDLELQ-LIVPSDVLQRYpildqnG---HVSKFIISFDKNGKRWEFPLATRNTGPHpkpTVPPASWHPFVAEYGLRAGDSVLFY 102 556677777776.999999999999996433...34556677899*********876666557779999********************* PP E-SS.SEE..EEE CS B3 84 ldgr.sefelvvk 95 ++ + v+ Manes.07G020700.1.p 103 TRRDdLPDKIQVR 115 6654444545554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.06E-10 | 13 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-11 | 14 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.00E-7 | 15 | 102 | No hit | No description |
SMART | SM01019 | 0.006 | 16 | 120 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MQGIIPINDP NTVVLFSKLL TKTDLELQLI VPSDVLQRYP ILDQNGHVSK FIISFDKNGK 60 RWEFPLATRN TGPHPKPTVP PASWHPFVAE YGLRAGDSVL FYTRRDDLPD KIQVRGLRKT 120 ILFRGEESWV EV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G020700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021664346.1 | 6e-48 | uncharacterized protein LOC110653034 | ||||
TrEMBL | A0A2C9VHS4 | 6e-92 | A0A2C9VHS4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030218m | 6e-81 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15290 | 3 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 1e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G020700.1.p |