PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G020500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 133aa MW: 15207.7 Da PI: 10.0518 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.5 | 1.8e-11 | 18 | 119 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkl 84 +l+++ l++ +l++p + ++++ g + sk ++ d++g++We+ l r+++ v + W Fv + gL++gD+v+F+ Manes.07G020500.1.p 18 KLLKKTDLEH-QLIVPSEVLKKYpildqnG---HVSKFIISFDKNGKRWEFPLATRNTGIYekpSVPPASWHPFVAEYGLRAGDSVLFYT 103 4445555555.5999*********996433...34556777899*********544433224445555*********************8 PP -SS.SEE..EEEEE-S CS B3 85 dgr.sefelvvkvfrk 99 ++ + v+ +rk Manes.07G020500.1.p 104 RRDdPANKIQVRGLRK 119 7766777777766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.02E-10 | 14 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.769 | 14 | 118 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.76E-8 | 15 | 118 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.6E-12 | 15 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0046 | 16 | 120 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-7 | 20 | 110 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MKDIIPINDP KTVVLFSKLL KKTDLEHQLI VPSEVLKKYP ILDQNGHVSK FIISFDKNGK 60 RWEFPLATRN TGIYEKPSVP PASWHPFVAE YGLRAGDSVL FYTRRDDPAN KIQVRGLRKT 120 ILFKGEESWV EV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G020500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021664346.1 | 1e-50 | uncharacterized protein LOC110653034 | ||||
TrEMBL | A0A2C9VHR2 | 6e-92 | A0A2C9VHR2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030218m | 2e-91 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15290 | 3 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 9e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G020500.1.p |