PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.07G020400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bZIP

Protein Properties

Length: 377aa MW: 42257.5 Da PI: 9.0658

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.07G020400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.6	4.6e-07	244	287	17	60
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 A+rsR RK+++i+eLe+ v++L+ae ++ ++e l+++ l Manes.07G020400.1.p 244 AQRSRVRKLQYIAELERNVQALQAEGSEVSAQVEFLNQQNLILS 287 89************************999999999988876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-4	233	292	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.52E-15	235	283	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.7E-6	244	287	No hit	No description
SuperFamily	SSF57959	6.25E-6	244	286	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MANSKGSSNM RSYMYSGKHA LLPPKIPFPS VTPSYLDYMP SGVIGSKAVQ RPREGNSHHQ 60 RTSSETLLLE EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYVDVANASN IDNAAQDEYR 120 YKNMMSKPSW GSQDFDYHND ARQNFLYADV NMKKQKNRSW DSSLNAATSP SGLPSARENA 180 VSQSLGSSCT PQEADGVPTS LNEKQDSAES GSNDSKKSSE RKDGSHARSS ALETDTKRAK 240 QQFAQRSRVR KLQYIAELER NVQALQAEGS EVSAQVEFLN QQNLILSMEN KALKQRLESL 300 AQEQLIKYVE HEVLEREIGR LRTLYQQQQQ PQPQQQPSSS HRRTNSRDIE SQFANLSLKY 360 KDANSGRDPV TGPLRT*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MANSKGSSNM RSYMYSGKHA LLPPKIPFPS VTPSYLDYMP SGVIGSKAVQ RPREGNSHHQ  60
RTSSETLLLE EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYVDVANASN IDNAAQDEYR  120
YKNMMSKPSW GSQDFDYHND ARQNFLYADV NMKKQKNRSW DSSLNAATSP SGLPSARENA  180
VSQSLGSSCT PQEADGVPTS LNEKQDSAES GSNDSKKSSE RKDGSHARSS ALETDTKRAK  240
QQFAQRSRVR KLQYIAELER NVQALQAEGS EVSAQVEFLN QQNLILSMEN KALKQRLESL  300
AQEQLIKYVE HEVLEREIGR LRTLYQQQQQ PQPQQQPSSS HRRTNSRDIE SQFANLSLKY  360
KDANSGRDPV TGPLRT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.07G020400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021618862.1	0.0	uncharacterized protein At4g06598
Swissprot	Q8W3M7	7e-72	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A2C9VHU0	0.0	A0A2C9VHU0_MANES; Uncharacterized protein
STRING	cassava4.1_026621m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5123	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-120	bZIP family protein

Link Out ? help Back to Top
Phytozome	Manes.07G020400.1.p

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]