PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G017600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | GeBP | ||||||||
Protein Properties | Length: 400aa MW: 44555.4 Da PI: 5.8036 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 119.8 | 1.4e-37 | 170 | 266 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 lfqrlwse+Dei++L+G+idf++k+g++ps+d++ f++f+kks++f+vs sql +K+ rLKkKf+++v+k k+g++++fsk+hdqk+f+l Manes.07G017600.1.p 170 LFQRLWSEDDEIAVLKGIIDFTKKKGTDPSKDMTSFHDFIKKSLHFDVSLSQLKDKVWRLKKKFENHVSKGKKGENKTFSKAHDQKSFDL 259 79**************************************************************************************** PP DUF573 92 skkiWgs 98 skkiWgs Manes.07G017600.1.p 260 SKKIWGS 266 *****95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.1E-34 | 171 | 265 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MAPKRSTPLE DPPAASSSQE EESSSGEEDD GEEEEGSSSE EEETQGKPQK PSSQPASQIQ 60 TAKPVHKKPD SESESDESDS ESDSDDDRPN HARDATVKPI ASKPMEETPT KTTKPRSKPS 120 ASSPATAKST AAVKRASESD RDPKDSKRRK KKDSESDGVV EKSEDTKKQL FQRLWSEDDE 180 IAVLKGIIDF TKKKGTDPSK DMTSFHDFIK KSLHFDVSLS QLKDKVWRLK KKFENHVSKG 240 KKGENKTFSK AHDQKSFDLS KKIWGSEAIS GRGVDLGVKS NGKAKMNGGN NQRSKSFDTL 300 NAEQCLDVEK ETEKVDKMEV ETESHSGLKQ IVEFDRTASV AGMEEYVVKR GLDMLEGAKK 360 AEMEEKWRQL HVAELELFLK RNELIREQAK LMLAAYKTE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 148 | PKDSKRR |
2 | 147 | 152 | RRKKKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G017600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021619093.1 | 0.0 | GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | A0A2C9VHN3 | 0.0 | A0A2C9VHN3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_009078m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 6e-36 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G017600.1.p |