PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.07G000800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

G2-like

Protein Properties

Length: 333aa MW: 37057.1 Da PI: 8.7271

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.07G000800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.9	7.4e-31	172	226	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH+rFve+v+ LGG+ kAtPk il+lm+v+gLt+ hvkSHLQkYR+ Manes.07G000800.1.p 172 KTRIRWTKDLHKRFVECVDILGGPVKATPKLILKLMGVEGLTIFHVKSHLQKYRI 226 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.611	169	229	IPR017930	Myb domain
SuperFamily	SSF46689	4.66E-16	171	226	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.8E-23	172	226	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.9E-27	172	227	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-8	176	225	IPR001005	SANT/Myb domain
Pfam	PF14379	5.7E-19	254	298	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MRVFFQSDHL PIPLGCSTDG NPGASDIPSS AFCTMKGCMS FAQGDDYDFN SLSGSQATET 60 LGLQSTVKSE SNKNLTIKET MCQDLHPHSS GGDLFLPILQ KSANELNQPN QSHINFKNHQ 120 NCENGYQLFS SQFTKPINYN FKPAAKQPKH PCYGIVSANS KSVTSGPAGT CKTRIRWTKD 180 LHKRFVECVD ILGGPVKATP KLILKLMGVE GLTIFHVKSH LQKYRISRYI PKSTEGKTNR 240 NLTNTIALDP KAGMQIAETL RMQIDVQKRL QEQLEIQRNL QSRIEEQGRQ LRKMLDLQLV 300 TNKTLTETKN SSDLAFQEDP SNDPIEGLGD FH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	172	229	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	172	229	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-21	172	229	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	172	229	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	172	229	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	172	229	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	172	229	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	172	229	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	172	229	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	172	229	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	172	229	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	172	229	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.07G000800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021618117.1	0.0	myb family transcription factor PHL5-like isoform X2
Swissprot	Q0WVU3	1e-50	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A2C9VIF5	0.0	A0A2C9VIF5_MANES; Uncharacterized protein
STRING	cassava4.1_029103m	1e-177	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	5e-53	G2-like family protein

Link Out ? help Back to Top
Phytozome	Manes.07G000800.1.p