PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G000300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 562aa MW: 63935.1 Da PI: 6.7077 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 94.4 | 1.1e-29 | 125 | 210 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+++r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Manes.07G000300.1.p 125 RWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMyEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 210 8*************************************99******************************98..55667*******85 PP | |||||||
2 | trihelix | 54.5 | 3e-17 | 416 | 496 | 2 | 81 |
trihelix 2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 Wt+ e+ L+++r++me+r++++ +++lWee+s+km+ g+e+s+ +C+ekw+n ++ kk ke+ ++ ++ +s+ + Manes.07G000300.1.p 416 WTEAETARLMQLRSNMESRFQQSGcmEEEALWEEISAKMAYMGYEKSALMCEEKWKNKEGNNKKRKENTRG-SCYFQSNESI 496 *********************96435889*************************************99886.5766666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.946 | 118 | 183 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.2 | 122 | 185 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 3.9E-20 | 125 | 211 | No hit | No description |
CDD | cd12203 | 1.93E-19 | 125 | 190 | No hit | No description |
PROSITE profile | PS50090 | 6.632 | 408 | 474 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.3 | 412 | 476 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.7E-12 | 415 | 486 | No hit | No description |
CDD | cd12203 | 2.81E-17 | 416 | 481 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MEMEDHNHHN QYNIDLRQFI SGRPIHFPAI PQPSPTELFA AHRSLPPQTR HYDMMMLMPR 60 SGGLHDFHSD STTAACVPPP PPPPPAATAA ANSGNTTVAA TSATPTLSGL EAEIGSFGGD 120 AGTGRWPRQE TLTLLDIRSR LDSKFKEANQ KGPLWDEVSR IMYEEHGYQR SGKKCREKFE 180 NLYKYYKKTK EGKAGRQDGK HYRFFRQLEA LYGETSNPAL VPETQFGGTG LRFHSSNQAN 240 NGIFHSQKLC DSLSLSDSAE FDTSSEENDL STGTLMENGS TEKRRKRRDG KSWKTKIKDF 300 IDSQMRKLIE RQEAWLEKVT KTLEQKEQER TLREEEWRKR EAARIDREQK FWAKERAWIE 360 ARDAALMETL RKLTGREVNA SSAEELIRVY EIQNQRENGI ESGSERAHNS LKCESWTEAE 420 TARLMQLRSN MESRFQQSGC MEEEALWEEI SAKMAYMGYE KSALMCEEKW KNKEGNNKKR 480 KENTRGSCYF QSNESIYNPG GTYCEINEQG PETVRLQANE GSSPANSNAG NTVSESCFRF 540 LMGDGGENLW ENYGLKLSKG D* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G000300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC184063 | 8e-45 | AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence. | |||
GenBank | AC214419 | 8e-45 | AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021617423.1 | 0.0 | trihelix transcription factor PTL-like | ||||
Swissprot | Q9LZS0 | 1e-139 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A2C9VH52 | 0.0 | A0A2C9VH52_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_004704m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2022 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 1e-122 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G000300.1.p |
Publications ? help Back to Top | |||
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