PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G178000.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | G2-like | ||||||||
Protein Properties | Length: 483aa MW: 53189.5 Da PI: 5.9791 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109.4 | 1.8e-34 | 264 | 318 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++LGG+ekAtPk +l+lm+v+gLt++hvkSHLQkYR+ Manes.06G178000.4.p 264 KPRMRWTPELHECFVEAVNKLGGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRI 318 79****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.817 | 261 | 321 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.85E-19 | 261 | 318 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-32 | 263 | 319 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-26 | 264 | 319 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-10 | 266 | 317 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.0E-22 | 354 | 401 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MNRNDVGSAT KNECKGITQP YYTTISPIHD FFSIESEGQS STTTECSSCP SPLIRTESLS 60 SPKNMQASTV QPVKYSLKSG PDSPPPVFHV QHSKSTFQRC SVFCTSLYLS SSSSSETNRP 120 LGNLPFLPHP PTHSQSVSAV GSTKSPALFS WDISGFQVEK ETSDAFVKDF LNLHGNASEG 180 SFHGITSASD NLALTEQLEL QFLSDELDIA ITDHGENPRV DEIYETSESY TAMGLTCNQN 240 FASVAPSVDD NSSLPSPGPA TMHKPRMRWT PELHECFVEA VNKLGGAEKA TPKGVLKLMN 300 VEGLTIYHVK SHLQKYRIAK YLPERKEEKK VSCSEEKNAA PSCIEVDGRR KGTIQITEAL 360 RMQMEVQKQL HEQLEVQRVL QLRIEEHARY LQKILEEQQK AGSALLSPKS LSSQDSELVQ 420 PSSLEGAPHA RSSESKTDAS SLSKKRASDR SDFEQQACVK KMHLEEKPES AVEEVVVENP 480 VQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G178000.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614660.1 | 0.0 | myb family transcription factor PHL6 isoform X6 | ||||
Swissprot | Q949U2 | 1e-130 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A251L6S9 | 0.0 | A0A251L6S9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_006556m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 1e-116 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G178000.4.p |
Publications ? help Back to Top | |||
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