PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G178000.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family G2-like
Protein Properties Length: 484aa    MW: 53303.6 Da    PI: 5.7275
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G178000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36e-32264319155
              G2-like   1 kprlrWtpeLHerFveaveqLGGse.kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr+rWtpeLHe+Fveav++LGG+e +AtPk +l+lm+v+gLt++hvkSHLQkYR+
  Manes.06G178000.3.p 264 KPRMRWTPELHECFVEAVNKLGGAEiEATPKGVLKLMNVEGLTIYHVKSHLQKYRI 319
                          79*********************9868****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.48E-17261319IPR009057Homeodomain-like
PROSITE profilePS5129412.536261322IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-30263320IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-23264320IPR006447Myb domain, plants
PfamPF002491.8E-10266318IPR001005SANT/Myb domain
PfamPF143791.0E-22355402IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MNRNDVGSAT KNECKGITQP YYTTISPIHD FFSIESEGQS STTTECSSCP SPLIRTESLS  60
SPKNMQASTV QPVKYSLKSG PDSPPPVFHV QHSKSTFQRC SVFCTSLYLS SSSSSETNRP  120
LGNLPFLPHP PTHSQSVSAV GSTKSPALFS WDISGFQVEK ETSDAFVKDF LNLHGNASEG  180
SFHGITSASD NLALTEQLEL QFLSDELDIA ITDHGENPRV DEIYETSESY TAMGLTCNQN  240
FASVAPSVDD NSSLPSPGPA TMHKPRMRWT PELHECFVEA VNKLGGAEIE ATPKGVLKLM  300
NVEGLTIYHV KSHLQKYRIA KYLPERKEEK KVSCSEEKNA APSCIEVDGR RKGTIQITEA  360
LRMQMEVQKQ LHEQLEVQRV LQLRIEEHAR YLQKILEEQQ KAGSALLSPK SLSSQDSELV  420
QPSSLEGAPH ARSSESKTDA SSLSKKRASD RSDFEQQACV KKMHLEEKPE SAVEEVVVEN  480
PVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-26264322259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-26264322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-26264322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-26264322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-26264322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-26264322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-26264322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-26264322259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G178000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614659.10.0myb family transcription factor PHL6 isoform X5
SwissprotQ949U21e-128PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A251KRK40.0A0A251KRK4_MANES; Uncharacterized protein
STRINGcassava4.1_006556m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-114G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]