PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G176100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YC
Protein Properties Length: 266aa    MW: 29630.7 Da    PI: 5.2761
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G176100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.81e-55791831102
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw++q   ie+ tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd
  Manes.06G176100.1.p  79 QLQMFWANQmqeIEQITDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTD 168
                          89******988889**************************************************************************** PP

                NF-YC  88 ifdflvdivprdelk 102
                          +fdflvdi+prdelk
  Manes.06G176100.1.p 169 VFDFLVDIIPRDELK 183
                          ************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.19E-3468173IPR009072Histone-fold
PfamPF008082.3E-21101164IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.4E-37102179IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDQSEQTQQQ QQPVMGVVAG AGQMSYTTNP YQTAAMMASG TPAIAVPSPT QPPTTFSNSP  60
HQLTYQQAQH FHHQQQQQQL QMFWANQMQE IEQITDFKNH SLPLARIKKI MKADEDVRMI  120
SAEAPVIFAK ACEMFILELT LRSWIHTEEN KRRTLQKNDI AAAISRTDVF DFLVDIIPRD  180
ELKEEGLGVT KATIPMVGSP AEIPYYYVPP QPPVGPPGMI MGKPVDQAAA FGAQQLRPPV  240
AFMPWPQTQP PPPPQQEAQQ QQSDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-5887179395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G176100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616875.10.0nuclear transcription factor Y subunit C-2-like
TrEMBLA0A2C9VT840.0A0A2C9VT84_MANES; Uncharacterized protein
STRINGcassava4.1_014053m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.25e-72nuclear factor Y, subunit C2