PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G169700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 679aa    MW: 75556.4 Da    PI: 10.2945
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G169700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52.1e-101059245
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwq 45
                         ++W t E++ll++av+++G+ +W++Ia +++        +t  +c+++++
  Manes.06G169700.1.p 10 QPWGTLEELLLACAVNRHGTQCWDSIAVEVQnrttnlSSLTSQNCIDKFN 59
                         79*****************************6655555556666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.4E-5864IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-5945IPR009057Homeodomain-like
PfamPF002499.4E-101061IPR001005SANT/Myb domain
SuperFamilySSF466892.57E-51064IPR009057Homeodomain-like
CDDcd001672.60E-51162No hitNo description
SMARTSM002977.5E-17313422IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.2E-16314442IPR001487Bromodomain
SuperFamilySSF473704.71E-18315424IPR001487Bromodomain
CDDcd043694.11E-16324417No hitNo description
PfamPF004393.6E-13331406IPR001487Bromodomain
PROSITE profilePS5001412.181332403IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MAMEHQSTVQ PWGTLEELLL ACAVNRHGTQ CWDSIAVEVQ NRTTNLSSLT SQNCIDKFND  60
LKRRFMPPND TSSSLVPMVD ELRRIRMEEL RREVQRHDMS IVSLQLKVKR LEDERESSLR  120
EGVDLARETG TSPEMIVGKS AAGNESGDDR SFNESNSTGQ QKAERTTVMD RNDTVNGKPD  180
IKPEPAITNE KDPVRAGSDP EAERNWSHNG TLREVDDDEN DKIPTNKKEP EIKMSQTTGG  240
LGESNELGES VGESKREDKE EKKQNSDVQS SASLSLKTKK RRLKGIAGGR NGVGVGSSSG  300
EEPEGGDEVS PATKRVPAVK SEPLLKFLGI IWSHRLSSVF ERRLQSQESE GYKKLIRQHI  360
DLKMIQCRLD KGAYSACVQK FFRDLLLLFN NAITFFGKNS PESVAASELI SIVRKEMTKK  420
LQKPKPEPVT VKPEPRQQPV SFPRSNKSSS TLVVCGKGNS VKATSENATK KVDKKDRGGE  480
DKPKVNEKKI EGSFIKIEEK GIRKKRTKER SVSSHRNSNT TKNDGEIKHQ YGGNELSSHD  540
ALEMKVERKG SSTRKRQGAA SFLKRMKQNS PSKVTDNDEE DDSSEDERKD GNGKGKGKGK  600
EENVRRGRNR DGISERVTRS SRGRGAREES GKAKRIGRPP KKQAESTVES DGPRKRGRDN  660
GGPDVEVGSG RARKRSRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275281LKTKKRR
2278283KKRRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G169700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616698.10.0uncharacterized protein LOC110618012
TrEMBLA0A2C9VRJ20.0A0A2C9VRJ2_MANES; Uncharacterized protein
STRINGcassava4.1_002976m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.16e-28DNA-binding bromodomain-containing protein