PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G166200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 412aa    MW: 47139 Da    PI: 6.3669
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G166200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.78.5e-2080176185
             trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                          +Wt++ v++Li+++   +++   +            +k+++W+ vsk m ++ +++sp+qC++k+++lnkryk+++++ +++ +++++++
  Manes.06G166200.1.p  80 KWTDNVVRLLIAVVACAGDDGAFEGveglkrksgilQKEGKWKTVSKIMISKRCHVSPQQCEDKFNDLNKRYKRLNDILGREtSCRVVEN 169
                          7*************9766666654333555666788********************************************9956999999 PP

             trihelix  79 cpyfdql 85 
                           ++ d++
  Manes.06G166200.1.p 170 PALMDSM 176
                          8888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1778203No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MNLVGGLEND HQTIGLMEVK VSIPKEYSVS FSKGKAVSCF TATNDGSVSE DDEPSFTEDS  60
NGENYIGAKG KKGSPWQRMK WTDNVVRLLI AVVACAGDDG AFEGVEGLKR KSGILQKEGK  120
WKTVSKIMIS KRCHVSPQQC EDKFNDLNKR YKRLNDILGR ETSCRVVENP ALMDSMPHLS  180
AKAKDDVRKI LSSKHLFYKE MCAYHNGQRI PNCQDLDLQG SSLPIERCSR DNNGSEEEEA  240
EGHDDSDDDE SDSEGDLKAK KDEEKMGKFK SSKVNEEDDH LWSQSGICNG FEVEMSGIFQ  300
DPTVSLWEKK KWIKKQKFQL LEQRRVCILA QAFELEKQHI KWLRYCSKKD REFERLRLEN  360
ERMRLENEQS ILQLRQKQLE MDFRSSETSR HPTSLGIDRM QGRDQIDLGR H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G166200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617153.10.0uncharacterized protein LOC110618304
TrEMBLA0A2C9VSY50.0A0A2C9VSY5_MANES; Uncharacterized protein
STRINGcassava4.1_008712m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-68sequence-specific DNA binding transcription factors