PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G146600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 290aa    MW: 33051 Da    PI: 7.7502
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G146600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88e-161764148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W+++Ed++l ++v ++G g+W++++   g+ R +k+c++rw +yl
  Manes.06G146600.1.p 17 KGLWSPDEDQRLRNYVLKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 64
                         678*******************************************97 PP
2Myb_DNA-binding50.16.2e-1670115148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++ +E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w+++l
  Manes.06G146600.1.p  70 RGLFSSQEEETILTLHRLLGNK-WSQIAQHLP-GRTDNEIKNYWHSHL 115
                          7889******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-221067IPR009057Homeodomain-like
PROSITE profilePS5129418.61264IPR017930Myb domain
SuperFamilySSF466891.43E-2814111IPR009057Homeodomain-like
SMARTSM007179.1E-111666IPR001005SANT/Myb domain
PfamPF002493.1E-141764IPR001005SANT/Myb domain
CDDcd001672.26E-92064No hitNo description
PROSITE profilePS5129425.67165119IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-2668119IPR009057Homeodomain-like
SMARTSM007175.2E-1569117IPR001005SANT/Myb domain
PfamPF002492.1E-1470115IPR001005SANT/Myb domain
CDDcd001671.26E-1073115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGCKSSDKPK QKPKHRKGLW SPDEDQRLRN YVLKHGHGCW SSVPINAGLQ RNGKSCRLRW  60
INYLRPGLKR GLFSSQEEET ILTLHRLLGN KWSQIAQHLP GRTDNEIKNY WHSHLKKKVL  120
KGDQGTKEAN VYNTTSDNLD NNSPKKITMM QTPDFESLLM NMENSSTDAD QSVPRMSESP  180
KQPNRSSLPK LMFAEWLSLD SFSSLSCEGI MSSKDQNVSS SFQDNFMQGC FLNEGTFGNG  240
EYRNLLSYAS PDDMFSSQLK FECQSSGNEQ FVDFSCGEDI CSEFNMRSEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231311923128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G146600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346603e-40KM034660.1 Jatropha curcas clone JcMYB040 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617084.10.0transcription factor LAF1-like
SwissprotQ9M0K46e-63LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A2C9VQX20.0A0A2C9VQX2_MANES; Uncharacterized protein (Fragment)
STRINGcassava4.1_031686m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.13e-65myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]