PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.06G145500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HD-ZIP

Protein Properties

Length: 809aa MW: 88726.8 Da PI: 6.3516

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G145500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.2	4.5e-21	112	167	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k Manes.06G145500.1.p 112 KKKYHRHTPNQIQELETFFKQCPHPDEKQRMELSRRLGLESKQIKFWFQNRRTQMK 167 79999************************************************999 PP
2	START	191.9	3.1e-60	317	539	2	206
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 la++a++el+k a+ ++p+W+++ + ++ +e++++f++ + + +ea r++g+v+ ++ l e+l+d++ +W e ++ ka Manes.06G145500.1.p 317 LALAAMDELIKIAQIDSPLWMTMDggkDALKHEEYMRTFSPCIGvkpssFVTEATRETGIVIINSLALAETLMDVN-RWLEAFPgliaKA 405 6899*******************9999*******9988999***********************.********* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 +t++vissg galqlm ae+q++sp vp R + f+R+++q+ +g+w++vdvS+d +q+ ++s+s++ ++++pSg+++++++ng s Manes.06G145500.1.p 406 STIDVISSGvggtknGALQLMHAEFQVGSPFVPvRQVRFLRFCKQHAEGVWAVVDVSIDANQESSNSHSFAACRRFPSGCIMQDMPNGCS 495 ************************************************************************************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +vtwveh +++++ +h+l+rs+++sgla+ga++wvatlqr+ce+ Manes.06G145500.1.p 496 RVTWVEHSEYDESAVHQLYRSVLSSGLAFGARRWVATLQRYCEC 539 ****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-21	97	163	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.05E-20	99	169	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.848	109	169	IPR001356	Homeobox domain
SMART	SM00389	4.3E-18	111	173	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-18	112	167	IPR001356	Homeobox domain
CDD	cd00086	1.89E-19	112	169	No hit	No description
PROSITE pattern	PS00027	0	144	167	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.388	307	542	IPR002913	START domain
SuperFamily	SSF55961	3.96E-29	308	539	No hit	No description
CDD	cd08875	1.17E-113	311	538	No hit	No description
SMART	SM00234	2.9E-44	316	539	IPR002913	START domain
Pfam	PF01852	5.5E-53	317	539	IPR002913	START domain
SuperFamily	SSF55961	1.65E-19	567	802	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence Send to blast
MISNSSSVNS PGGGVSKIVA EIVTHRNTMH SGGIAHQPPV ITSSIPKSPA LSLSLKGTMD 60 SHGDMGLLGE HFDPSIAGRM KEDGYESKSG SDNLEGASGD DQEAGEDQRT QKKKYHRHTP 120 NQIQELETFF KQCPHPDEKQ RMELSRRLGL ESKQIKFWFQ NRRTQMKTQL ERHENIILRQ 180 ENDKLRAENE LLKQNMTDPI CNNCGSPVVP GPVSYEQQQL RIENARLNDE LGRVYALANK 240 FLGRPLSSSS GHVPPFDSNS KLDLSVGRNG YGGLGSIETS LPIGLDYSDG LTMPLMKPMT 300 SPMLNEVPYD RSLFIDLALA AMDELIKIAQ IDSPLWMTMD GGKDALKHEE YMRTFSPCIG 360 VKPSSFVTEA TRETGIVIIN SLALAETLMD VNRWLEAFPG LIAKASTIDV ISSGVGGTKN 420 GALQLMHAEF QVGSPFVPVR QVRFLRFCKQ HAEGVWAVVD VSIDANQESS NSHSFAACRR 480 FPSGCIMQDM PNGCSRVTWV EHSEYDESAV HQLYRSVLSS GLAFGARRWV ATLQRYCECM 540 SILMSPTISA EDQTVINISG KKSMLKLARR MVDNFCSGVC ASSVHKWDKL LVGNVGEDMR 600 ILTRKNINDP GEPPGIVLSA ATSVWLPVMR DRLFDFLRDE RSRSEWDILS HGGMMQEMVH 660 ISKGHNRGNC VSLLRSTAVS PNANENSMII LQETWNDASS SLVVYAPVDI QSISVVMNGG 720 DSTYVALLPS GFVILPDDTS SQGGPNFSST LVKRDSDGGD GGGSILTVGF QILVNNLPTA 780 KLTVESVETV NNLISCTIQR IKTVLQLT*

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence Send to blast

MISNSSSVNS PGGGVSKIVA EIVTHRNTMH SGGIAHQPPV ITSSIPKSPA LSLSLKGTMD  60
SHGDMGLLGE HFDPSIAGRM KEDGYESKSG SDNLEGASGD DQEAGEDQRT QKKKYHRHTP  120
NQIQELETFF KQCPHPDEKQ RMELSRRLGL ESKQIKFWFQ NRRTQMKTQL ERHENIILRQ  180
ENDKLRAENE LLKQNMTDPI CNNCGSPVVP GPVSYEQQQL RIENARLNDE LGRVYALANK  240
FLGRPLSSSS GHVPPFDSNS KLDLSVGRNG YGGLGSIETS LPIGLDYSDG LTMPLMKPMT  300
SPMLNEVPYD RSLFIDLALA AMDELIKIAQ IDSPLWMTMD GGKDALKHEE YMRTFSPCIG  360
VKPSSFVTEA TRETGIVIIN SLALAETLMD VNRWLEAFPG LIAKASTIDV ISSGVGGTKN  420
GALQLMHAEF QVGSPFVPVR QVRFLRFCKQ HAEGVWAVVD VSIDANQESS NSHSFAACRR  480
FPSGCIMQDM PNGCSRVTWV EHSEYDESAV HQLYRSVLSS GLAFGARRWV ATLQRYCECM  540
SILMSPTISA EDQTVINISG KKSMLKLARR MVDNFCSGVC ASSVHKWDKL LVGNVGEDMR  600
ILTRKNINDP GEPPGIVLSA ATSVWLPVMR DRLFDFLRDE RSRSEWDILS HGGMMQEMVH  660
ISKGHNRGNC VSLLRSTAVS PNANENSMII LQETWNDASS SLVVYAPVDI QSISVVMNGG  720
DSTYVALLPS GFVILPDDTS SQGGPNFSST LVKRDSDGGD GGGSILTVGF QILVNNLPTA  780
KLTVESVETV NNLISCTIQR IKTVLQLT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G145500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021614580.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A2C9VR06	0.0	A0A2C9VR06_MANES; Uncharacterized protein
STRING	cassava4.1_002279m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Manes.06G145500.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]