PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.06G141800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

TCP

Protein Properties

Length: 359aa MW: 37747 Da PI: 5.6174

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G141800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.8	2.7e-36	85	157	3	74
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ Manes.06G141800.1.p 85 PAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsV 157 689************************************************************8877744421 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-29	90	167	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.512	90	144	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MDSNQHPTIE EIDQEQSITA NFSSSETSMV EPPDPEGQAE PEPTILLKEE ELTDTDGHEL 60 DNNNNNSLPI SLLQVPHSNN RALVPAKRPS KDRHTKVEGR GRRIRMPATC AARIFQLTRE 120 LGHKSDGETI RWLLEHAEPA IIEATGTGTV PAIAVSVNGT LKIPTTSPAR PDGDDLLPRK 180 RRKRPSNSDF VDVNEHQTSV SSGLAPIASM TTATAAVAAL PNFGGASAQG LVPLWPMGTF 240 MLPQSAGGGS NQPQLWAIPA AATPFFNVAG RPISTFVSAM QPGVQLGDGI SKSVGSGGAS 300 SPMGSMSSNS GTSTTNSAGG NNTSNGAANN TGAQMLRDFS LEIYDKKELQ FLGHPSKP*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MDSNQHPTIE EIDQEQSITA NFSSSETSMV EPPDPEGQAE PEPTILLKEE ELTDTDGHEL  60
DNNNNNSLPI SLLQVPHSNN RALVPAKRPS KDRHTKVEGR GRRIRMPATC AARIFQLTRE  120
LGHKSDGETI RWLLEHAEPA IIEATGTGTV PAIAVSVNGT LKIPTTSPAR PDGDDLLPRK  180
RRKRPSNSDF VDVNEHQTSV SSGLAPIASM TTATAAVAAL PNFGGASAQG LVPLWPMGTF  240
MLPQSAGGGS NQPQLWAIPA AATPFFNVAG RPISTFVSAM QPGVQLGDGI SKSVGSGGAS  300
SPMGSMSSNS GTSTTNSAGG NNTSNGAANN TGAQMLRDFS LEIYDKKELQ FLGHPSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	184	PRKRRKRP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00007	PBM	Transfer from 495258	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G141800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021616179.1	0.0	transcription factor TCP19-like
Swissprot	Q9LT89	4e-80	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A2C9VQR1	0.0	A0A2C9VQR1_MANES; Uncharacterized protein
STRING	XP_002510862.1	1e-159	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-78	TCP family protein

Link Out ? help Back to Top
Phytozome	Manes.06G141800.1.p