PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G141600.4.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 186aa    MW: 21750.2 Da    PI: 7.4189
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G141600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.8e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k ien + rqvtfskRrng+lKKA+ELSvLCdaev+v+ifs++g+l e+ss
  Manes.06G141600.4.p  9 KMIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVSVLIFSQKGRLSEFSS 59
                         68***********************************************96 PP
2K-box61.34e-2182170997
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           +e+  ++l  e++ + k+ie+L+  qR++lG++L s+sl+eLq++ ++Leksl++iR+kK+ +++eqie+l++ke+ l  en  Lr+k
  Manes.06G141600.4.p  82 DTEQRIQQLISESTEMVKKIEQLEILQRKFLGQELASCSLEELQEMDSKLEKSLSNIRAKKEVMFKEQIEQLKEKERLLLVENAILREK 170
                          5788899999****************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.501161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-38160IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-29323IPR002100Transcription factor, MADS-box
CDDcd002653.99E-39372No hitNo description
SuperFamilySSF554551.7E-31375IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014864.9E-2084170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.17487180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVRGKVQMKM IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVSVLIFSQ KGRLSEFSSN  60
DMQKTIERYR KHVEELQPEN NDTEQRIQQL ISESTEMVKK IEQLEILQRK FLGQELASCS  120
LEELQEMDSK LEKSLSNIRA KKEVMFKEQI EQLKEKERLL LVENAILREK ELHVDQFVNI  180
YLVAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-19181181Myocyte-specific enhancer factor 2B
1tqe_Q7e-19181181Myocyte-specific enhancer factor 2B
1tqe_R7e-19181181Myocyte-specific enhancer factor 2B
1tqe_S7e-19181181Myocyte-specific enhancer factor 2B
6c9l_A7e-19181181Myocyte-specific enhancer factor 2B
6c9l_B7e-19181181Myocyte-specific enhancer factor 2B
6c9l_C7e-19181181Myocyte-specific enhancer factor 2B
6c9l_D7e-19181181Myocyte-specific enhancer factor 2B
6c9l_E7e-19181181Myocyte-specific enhancer factor 2B
6c9l_F7e-19181181Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G141600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615265.11e-129MADS-box protein AGL42-like isoform X2
SwissprotQ9FIS11e-72AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A251KQ731e-127A0A251KQ73_MANES; Uncharacterized protein
STRINGcassava4.1_025707m1e-115(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.34e-75AGAMOUS-like 42