PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G141600.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24735.5 Da    PI: 6.5552
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G141600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k ien + rqvtfskRrng+lKKA+ELSvLCdaev+v+ifs++g+l e+ss
  Manes.06G141600.2.p  9 KMIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVSVLIFSQKGRLSEFSS 59
                         68***********************************************96 PP
2K-box62.41.7e-21801737100
                K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                          ++ +e+  ++l  e++ + k+ie+L+  qR++lG++L s+sl+eLq++ ++Leksl++iR+kK+ +++eqie+l++ke+ l  en  Lr+
  Manes.06G141600.2.p  80 NNDTEQRIQQLISESTEMVKKIEQLEILQRKFLGQELASCSLEELQEMDSKLEKSLSNIRAKKEVMFKEQIEQLKEKERLLLVENAILRE 169
                          3367889999******************************************************************************** PP

                K-box  97 klee 100
                          k +e
  Manes.06G141600.2.p 170 KCDE 173
                          9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.501161IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-29323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-31375IPR002100Transcription factor, MADS-box
CDDcd002654.22E-39372No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2084171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.46687177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVRGKVQMKM IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVSVLIFSQ KGRLSEFSSN  60
DMQKTIERYR KHVEELQPEN NDTEQRIQQL ISESTEMVKK IEQLEILQRK FLGQELASCS  120
LEELQEMDSK LEKSLSNIRA KKEVMFKEQI EQLKEKERLL LVENAILREK CDEKACPLPT  180
QQKEVSFSSL SSDISEVETR LSIRLPEPVT HLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-18181181Myocyte-specific enhancer factor 2B
1tqe_Q1e-18181181Myocyte-specific enhancer factor 2B
1tqe_R1e-18181181Myocyte-specific enhancer factor 2B
1tqe_S1e-18181181Myocyte-specific enhancer factor 2B
6c9l_A1e-18181181Myocyte-specific enhancer factor 2B
6c9l_B1e-18181181Myocyte-specific enhancer factor 2B
6c9l_C1e-18181181Myocyte-specific enhancer factor 2B
6c9l_D1e-18181181Myocyte-specific enhancer factor 2B
6c9l_E1e-18181181Myocyte-specific enhancer factor 2B
6c9l_F1e-18181181Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G141600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615263.11e-151MADS-box protein AGL42-like isoform X1
RefseqXP_021615264.11e-151MADS-box protein AGL42-like isoform X1
SwissprotQ9FIS18e-74AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A251L5C91e-149A0A251L5C9_MANES; Uncharacterized protein
STRINGcassava4.1_025707m1e-150(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.33e-76AGAMOUS-like 42