PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G133500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 318aa    MW: 35480.1 Da    PI: 9.3632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G133500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017727323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C++C+++F +   +  H+r+H
  Manes.06G133500.1.p  7 CKICNRRFANGKAMGGHMRSH 27
                         *******************99 PP
2zf-C2H215.45.3e-05246268123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kCp+C+k+F +   L  H ++H
  Manes.06G133500.1.p 246 FKCPYCDKVFESGQALGGHKKVH 268
                          89**********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.785532IPR007087Zinc finger, C2H2
SMARTSM003550.21527IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-8629IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PfamPF139122.3E-10193216IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-7194268No hitNo description
SMARTSM003550.38194216IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034194221IPR007087Zinc finger, C2H2
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
PfamPF139121.3E-11246270IPR007087Zinc finger, C2H2
SMARTSM003550.0046246268IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367246268IPR007087Zinc finger, C2H2
PROSITE patternPS000280248268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEKNRICKIC NRRFANGKAM GGHMRSHLAK LPLPPKPIPS EQVEPPSSKS LSPSSSAVSL  60
NYPSTKNPMQ SHRSVNHRLP LMSKTNLAAL LDGDSETESP KNTTQRRSKR RRKSLEKVAE  120
SIVKVSESTE QVSSISCIFN EEEVAMCLLM LSRDKRWTKK VVDKYMEDEA EDHSEEEDEP  180
SGVIRLRSKT NGRHTCETCK RVFRSYQALG GHKSSHTRIK TSVADEDEDR SRSSNGGVVG  240
NEPRIFKCPY CDKVFESGQA LGGHKKVHLS YLGNYKISIK SADNLLDLNL PAPEDDGEVS  300
QAEVSTFSNP KAYQMRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104111QRRSKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G133500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617148.10.0zinc finger protein ZAT9-like
TrEMBLA0A2C9VSK60.0A0A2C9VSK6_MANES; Uncharacterized protein
STRINGcassava4.1_023535m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-38C2H2-like zinc finger protein