PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G127100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LFY | ||||||||
Protein Properties | Length: 382aa MW: 42913.2 Da PI: 6.7887 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 653.6 | 2.7e-199 | 1 | 367 | 1 | 386 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlm 90 mdpeaf+aslfkwdpr+++ ++p+rlle a++++++l+a a+ r+l +leelf+ayG+ry+t+akiaelGftv+tL+dmkdeeld++m Manes.06G127100.1.p 1 MDPEAFTASLFKWDPRTVV-PAPNRLLE-AVAPPPQLTAGYAVRPRELCGLEELFQAYGIRYYTAAKIAELGFTVNTLLDMKDEELDEMM 88 9**************9876.66778865.44566666777888888899***************************************** PP FLO_LFY 91 kslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekk 180 +sls+ifr+dllvGeryGikaavraerrrleee+ ++rr+lls d+++aldalsqeglseepvq+ekeaagsgg+g ++e++aa+ Manes.06G127100.1.p 89 NSLSQIFRWDLLVGERYGIKAAVRAERRRLEEED--SRRRHLLSGDTTNALDALSQEGLSEEPVQQEKEAAGSGGSG--AWEAAAAA--- 171 ********************************88..99999********************************9998..88887776... PP FLO_LFY 181 seeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkia 270 +e+k++ ++rk +++ d d+++e +e++e++g++g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+ia Manes.06G127100.1.p 172 --AERKQQ----RRRKGQRK---VVDIDHDDE-NENDENGGAGGYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIA 251 ..223333....22333332...234444433.44556778889********************************************** PP FLO_LFY 271 kerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfn 360 k+rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLde+asnalrrafkergenvGawrqacykplv+iaarqgwdida+fn Manes.06G127100.1.p 252 KDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEDASNALRRAFKERGENVGAWRQACYKPLVTIAARQGWDIDAIFN 341 ****************************************************************************************** PP FLO_LFY 361 ahprLsiWYvPtkLrqLChlerskas 386 ahprL+iWYvPtkLrqLCh+er++a+ Manes.06G127100.1.p 342 AHPRLAIWYVPTKLRQLCHAERNSAA 367 **********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 5.1E-210 | 1 | 367 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MDPEAFTASL FKWDPRTVVP APNRLLEAVA PPPQLTAGYA VRPRELCGLE ELFQAYGIRY 60 YTAAKIAELG FTVNTLLDMK DEELDEMMNS LSQIFRWDLL VGERYGIKAA VRAERRRLEE 120 EDSRRRHLLS GDTTNALDAL SQEGLSEEPV QQEKEAAGSG GSGAWEAAAA AAERKQQRRR 180 KGQRKVVDID HDDENENDEN GGAGGYERQR EHPFIVTEPG EVARGKKNGL DYLFHLYEQC 240 REFLIQVQNI AKDRGEKCPT KVTNQVFRYA KKAGASYINK PKMRHYVHCY ALHCLDEDAS 300 NALRRAFKER GENVGAWRQA CYKPLVTIAA RQGWDIDAIF NAHPRLAIWY VPTKLRQLCH 360 AERNSAAASS SVSGGGDDLP F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-114 | 205 | 381 | 2 | 194 | PROTEIN LEAFY |
2vy2_A | 1e-114 | 205 | 381 | 2 | 194 | PROTEIN LEAFY |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G127100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021615449.1 | 0.0 | floricaula/leafy homolog | ||||
Swissprot | O04064 | 0.0 | FLLH_POPTR; Floricaula/leafy homolog | ||||
TrEMBL | A0A2C9VQH9 | 0.0 | A0A2C9VQH9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_031323m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8033 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-110 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G127100.1.p |
Publications ? help Back to Top | |||
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