PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G126500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 301aa    MW: 34480.7 Da    PI: 7.6377
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G126500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix751.2e-2340130182
             trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                          rW+k+e+ +Lie+++ +e+r+ rg+         l++p+W+++s++++++g++r+p+qC+++w+nl +++kkik +e++r + +++ +++
  Manes.06G126500.1.p  40 RWSKEETFVLIEGKKVVENRVDRGRrstsalgsdLIQPKWDSISSYCKQHGVNREPVQCRKRWSNLLGDFKKIKIWESQRINADETFWKM 129
                          8*********************986667777777*********************************************98888766655 PP

             trihelix  82 f 82 
                           
  Manes.06G126500.1.p 130 R 130
                          4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.62E-538111IPR009057Homeodomain-like
PfamPF138377.4E-1339130No hitNo description
PROSITE profilePS500907.39940106IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-640106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAPDSIDAQH FSTLPEPDKI RKQRALNVTG NGFKAPRHPR WSKEETFVLI EGKKVVENRV  60
DRGRRSTSAL GSDLIQPKWD SISSYCKQHG VNREPVQCRK RWSNLLGDFK KIKIWESQRI  120
NADETFWKMR NEHRRERELP SFFDREVYDI LNGGLFATEA IPLTFVAVKT EKNTDADEVA  180
AAVAEEQEQE EVEAVFASGQ HASADCTNKQ KNPGSTTWMA STSQKEWKRR RLSSNGFEDN  240
DPADQLIKIL ERNSNMLSVE LEAQNIRYEL DRSQRKEHND SLLGVLHKLT DALVRMADKL  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227231KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G126500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616635.10.0trihelix transcription factor ASR3-like
TrEMBLA0A2C9VQE00.0A0A2C9VQE0_MANES; Uncharacterized protein
STRINGcassava4.1_023178m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-77Trihelix family protein