PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G114200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 476aa    MW: 53571.2 Da    PI: 5.3933
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G114200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.45.7e-14145167426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          e C++++rtGtCk+G++CkF+H+
  Manes.06G114200.1.p 145 EDCSYYMRTGTCKFGSNCKFNHP 167
                          89********************9 PP
2zf-CCCH31.82.4e-10190215227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++ +C++++rtG CkyG  C+++H++
  Manes.06G114200.1.p 190 GQTECKYYLRTGGCKYGKACRYNHSR 215
                          6789********************95 PP
3zf-CCCH37.24.8e-12244267326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +++C +++r+G CkyG++C+F+H+
  Manes.06G114200.1.p 244 EKECLYYMRNGSCKYGANCRFNHP 267
                          679********************9 PP
4zf-CCCH27.93.9e-09377403127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+++++tG Ck+ ++Ck++H++
  Manes.06G114200.1.p 377 PGQPECSYYMKTGNCKFKSNCKYHHPK 403
                          5789*********************96 PP
5zf-CCCH33.47.8e-11427448526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++++++G+C+yG+ CkF H+
  Manes.06G114200.1.p 427 ICSYYSQYGICRYGPACKFDHP 448
                          7********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.72E-7140170IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-7141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065141169IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-11145167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5147166IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5188215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943188216IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-8190215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6192217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5194216IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5241268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756241269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6242268IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9244267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5247266IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5376403IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699376404IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6378403IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5380405IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6420448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.004422450IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6422449IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8427448IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4427447IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEYSEASNFI TNTANTNPKL GSQAPLTSFS ADPDSDLTLQ LRKELENKQL YLKEAGPEDE  60
EIASDAVEVE KVHEELEKQL HLNEDKDKHL IELSQDDDFN SGESNDGEER NINDKEDNDN  120
DEVEKKDERS NDNTRHQYPV RPEAEDCSYY MRTGTCKFGS NCKFNHPVRR RNQFTKEKVK  180
EREEPGERPG QTECKYYLRT GGCKYGKACR YNHSREKSPV LPAKIAVFPV LDLNFLGLPI  240
RLGEKECLYY MRNGSCKYGA NCRFNHPDPT AVGGSDPPSA FSNGGSATFQ SSPQSSVGSW  300
SSPRGLNEIA PFVPVIFPAT RGVTLQNPEW NGYQAPVYPP ERSIHLAPAY VINNLPADTN  360
VYGHQQQTPM EEFPERPGQP ECSYYMKTGN CKFKSNCKYH HPKNQIPELT PFSLSDKGLP  420
LRPGQHICSY YSQYGICRYG PACKFDHPIQ AATMTGSAED RARMSETGYE SDTAF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G114200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615933.10.0zinc finger CCCH domain-containing protein 43-like isoform X2
SwissprotQ9STM41e-141C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2C9VQ450.0A0A2C9VQ45_MANES; Uncharacterized protein
STRINGcassava4.1_006776m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-136C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]