PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G109000.4.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 286aa    MW: 32139.4 Da    PI: 8.5669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G109000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  Manes.06G109000.4.p 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                         678*******************************************97 PP
2Myb_DNA-binding45.41.9e-1467111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg ++++E++l + +++ lG++ W+ Ia+ ++ gRt++++k++w++ 
  Manes.06G109000.4.p  67 RGMFSQQEEDLVISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNSC 111
                          788*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-25664IPR009057Homeodomain-like
PROSITE profilePS5129424.171965IPR017930Myb domain
SuperFamilySSF466898.24E-2912108IPR009057Homeodomain-like
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
PfamPF002497.1E-151461IPR001005SANT/Myb domain
CDDcd001671.04E-101761No hitNo description
Gene3DG3DSA:1.10.10.604.3E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.38466116IPR017930Myb domain
SMARTSM007176.4E-1366114IPR001005SANT/Myb domain
PfamPF002491.8E-1367111IPR001005SANT/Myb domain
CDDcd001671.03E-970109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRHACCLKQ KLRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLVIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPATHKPIT EALEVKEEKI CVDKVSLQIP QSKALPAVAN TATQEPTFLI NGIEPGRYNS  180
SIPGLQRPNL RPFDQTQFET SSIFSFTSMP SLTSFDHGSV SATDFSDNSG SRMSSMFLNE  240
AKESSSNCSN ISSYTVSDEW NQDGRIKAEP MARRTASHSE FSIFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G109000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707851e-128AB970785.1 Populus tremula x Populus tremuloides PtxtMYB148 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616805.10.0myb-related protein 305-like isoform X1
SwissprotQ8LPH65e-81MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A2C9VPS90.0A0A2C9VPS9_MANES; Uncharacterized protein
STRINGcassava4.1_027017m1e-175(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-83myb domain protein 86