PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G109000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 370aa    MW: 41668 Da    PI: 6.6125
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G109000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.7e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  Manes.06G109000.1.p 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                         678*******************************************97 PP
2Myb_DNA-binding44.92.7e-1467110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg ++++E++l + +++ lG++ W+ Ia+ ++ gRt++++k++w++
  Manes.06G109000.1.p  67 RGMFSQQEEDLVISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                          788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-25664IPR009057Homeodomain-like
PROSITE profilePS5129424.171965IPR017930Myb domain
SuperFamilySSF466891.39E-2812108IPR009057Homeodomain-like
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
PfamPF002491.0E-141461IPR001005SANT/Myb domain
CDDcd001677.67E-111761No hitNo description
Gene3DG3DSA:1.10.10.606.5E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.38466116IPR017930Myb domain
SMARTSM007176.4E-1366114IPR001005SANT/Myb domain
PfamPF002492.6E-1367111IPR001005SANT/Myb domain
CDDcd001677.88E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRHACCLKQ KLRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLVIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPATHKPIT EALEVKEEKI CVDKVSLQIP QSKALPAVAN TATQEPTFLI NGTTCYSNGL  180
TENSGEQFMN KQIFDPFSYY EFSAGIEPGR YNSSIPGLQR PNLRPFDQTQ FETSSIFSFT  240
SMPSLTSFDH GSVSATDFSD NSGSRMSSMF LNEAKESSSN CSNISSYTGT GHQMNCMMEN  300
NAAFSWDADN KIDSMFQFPM NGIKMEELRP SPWQEGQLHT RNSVYFSSCP LTSLSEDLTG  360
VNFEAYHQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G109000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707851e-128AB970785.1 Populus tremula x Populus tremuloides PtxtMYB148 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616806.10.0protein ODORANT1-like isoform X2
TrEMBLA0A2C9VPR60.0A0A2C9VPR6_MANES; Uncharacterized protein
STRINGcassava4.1_027017m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-82myb domain protein 86