PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G105800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 427aa    MW: 48463.2 Da    PI: 7.3745
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G105800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-18180226148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT eEd ll ++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  Manes.06G105800.1.p 180 KGQWTIEEDRLLTQLVEQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 226
                          799*****************************.*************97 PP
2Myb_DNA-binding54.62.5e-17233274245
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + W+++Ed++l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Manes.06G105800.1.p 233 DMWSEDEDKILIHAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 274
                          67*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.822175230IPR017930Myb domain
SuperFamilySSF466891.37E-31177273IPR009057Homeodomain-like
SMARTSM007172.7E-16179228IPR001005SANT/Myb domain
PfamPF002499.9E-17180226IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-28181233IPR009057Homeodomain-like
CDDcd001671.01E-15183226No hitNo description
PROSITE profilePS5129420.488231281IPR017930Myb domain
SMARTSM007172.3E-15231279IPR001005SANT/Myb domain
PfamPF002492.5E-16233274IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-22234279IPR009057Homeodomain-like
CDDcd001672.82E-13235277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MSDYFSDKPS MKYGSPFEAP PSSPSKGFSQ DLHHFDQFHA NGLSLNPIFG AQNASNFDFF  60
DALPYGSSTN IDFSDYECKP FADNNGGHGQ VMDNFQNGGF LNLPHNQSNS IGTMMGSNQG  120
QGNMSLGFQE MKPINFVVPD EVSCINANQE YHKKVGVDKN RASSSMGRTW RGRKKNNVVK  180
GQWTIEEDRL LTQLVEQYGV RKWSHIAQML PGRIGKQCRE RWHNHLRPDI KKDMWSEDED  240
KILIHAHAEI GNKWAEIAKR LPGRTENSIK NHWNATKRRQ YSKRRCRSKY PKGSLLQEYI  300
KSLNLGSVPA AAGRFLGKSS DARAVNNISM KAPNLQPQVS EISQNNNRLF PNYYDFNEVP  360
AFDFDERMIQ EGCSFGSFLD EMANGDRGFD EKSFEMNVAM EEVSPFMDFG EKKELDLVEM  420
ISQARM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-441782802104MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-441782802104C-Myb DNA-Binding Domain
1msf_C3e-441782802104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G105800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616616.10.0transcription factor MYB98-like
SwissprotQ9S7L27e-93MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A2C9VPQ50.0A0A2C9VPQ5_MANES; Uncharacterized protein
STRINGcassava4.1_032562m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-95myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]