PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G099100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 314aa    MW: 33712.9 Da    PI: 8.6331
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G099100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-1399143347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
  Manes.06G099100.1.p  99 PWTEDEHKLFLIGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 143
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.89892148IPR017930Myb domain
SuperFamilySSF466891.2E-1694149IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1695146IPR006447Myb domain, plants
SMARTSM007171.3E-896146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-1098143IPR009057Homeodomain-like
PfamPF002491.8E-1099143IPR001005SANT/Myb domain
CDDcd001673.78E-899144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAGTCTTGGG GGGAGGGARE IMLFGVRVVV DSMRKSVSLN NLSQYEQPQE CNKSDIHKDG  60
TNNNSKEDVA AATAAGYASA DDAVPHSSNS RGERKRGVPW TEDEHKLFLI GLQKVGKGDW  120
RGISRNFVKT RTPTQVASHA QKYFLRRSNL NRRRRRSSLF DITTDTVSAF PMEEEQAHCQ  180
DNKNITVQSH PVPPPLPETN NIGNFHVMPA FPMTTSPVVL PVPIESPTKN LSLGQSKGAT  240
NLAANLIRPI PALPSPHASG ISDLYLNLKS SEDPSSLSLK LSLPCDERES SSMQSVFQVM  300
SGLNNGDSMI SVA*
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00631PBMTransfer from PK23829.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G099100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616298.10.0transcription factor MYB1R1-like
SwissprotQ2V9B04e-75MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A2C9VR080.0A0A2C9VR08_MANES; Uncharacterized protein
STRINGcassava4.1_012217m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.25e-57MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]