PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G098500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 281aa MW: 30257.7 Da PI: 7.0628 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.6e-10 | 162 | 209 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Manes.06G098500.1.p 162 SHSLAERARREKISERMKMLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 209 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.15E-10 | 156 | 213 | No hit | No description |
SuperFamily | SSF47459 | 6.02E-18 | 156 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-18 | 158 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.764 | 158 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-8 | 162 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 164 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDPPLINETS FSAANPSSYT LTEIWPCPAI NGQAVGVGGL GLRMGNLTGA FGERDGSVEE 60 STVTEQSVGG SGGNGRKRRD LSLEDDSSKM VSTSSSGNEL NDSNGKRIKI SGSRNESSNS 120 KAEVAPTSVA NKKKSEQSSK LSVPPNQDYI HVRARRGQAT DSHSLAERAR REKISERMKM 180 LQDLVPGCNK VIGKALVLDE IINYIQSLQH QVEFLSMKLE AVNSRMNVNP ALEGFHPKDV 240 GAQPFDAAGM IFGSQTARDY AQASQSEWLH MQIGGNFERT * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G098500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614719.1 | 0.0 | transcription factor bHLH79 | ||||
Swissprot | Q9LV17 | 1e-87 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A2C9VPE9 | 0.0 | A0A2C9VPE9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_013487m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1171 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 4e-89 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G098500.1.p |
Publications ? help Back to Top | |||
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