PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G091600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Dof | ||||||||
Protein Properties | Length: 332aa MW: 36434.1 Da PI: 8.6993 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 104.7 | 5.4e-33 | 1 | 49 | 14 | 62 |
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++tkfCy+nny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s Manes.06G091600.2.p 1 MDTKFCYFNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 49 69********************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.1E-25 | 1 | 47 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 4.0E-21 | 1 | 46 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 24.232 | 1 | 47 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MDTKFCYFNN YNVNQPRHFC KACQRYWTAG GTMRNVPVGA GRRKNKNSAS HYRHMTISEV 60 LQAARIEAPN GTHNPALKTN GRVLSFGLDA PICDSMVSVL NLADKRVLNG FHNLEEQRIP 120 VPFKGRENGD DCSSGSSVTV SNSMEEGGAT CSREPLMQSI NGFASPLPCL PGVPWNSALL 180 PPPFCPPGFP MSFYPHFWNC GIWNTPLLSP QSSSSSSNQR APSGNNSTLG KHSRDRYTLK 240 LDDFEKEEQP TKLKNGCILV PKILRIDDPT EAARSSIWAT LGIKNESFTG EGLFKAFQPK 300 TDERKHVAET SPILLANPAA ASRSINFNEN S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G091600.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614753.1 | 0.0 | cyclic dof factor 3-like | ||||
Swissprot | Q8LFV3 | 5e-98 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | A0A2C9VPE7 | 0.0 | A0A2C9VPE7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_007172m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 3e-92 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G091600.2.p |
Publications ? help Back to Top | |||
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