PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.06G091600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 463aa MW: 50801.1 Da PI: 6.5128

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G091600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.5e-39	120	180	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s Manes.06G091600.1.p 120 PDKILPCPRCKSMDTKFCYFNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 180 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	113	177	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-32	122	178	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.621	124	178	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	126	162	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MREDATTEPA IKLFGKKITL NTDGQPPLIS ADDLPSLERV EVVEEDDEKA EKDIPARIVP 60 DTAEENNVPL LGAEESADPE TNANPKTPSI NEESAKSKSS ETEKEQNYAS TPQEKILKKP 120 DKILPCPRCK SMDTKFCYFN NYNVNQPRHF CKACQRYWTA GGTMRNVPVG AGRRKNKNSA 180 SHYRHMTISE VLQAARIEAP NGTHNPALKT NGRVLSFGLD APICDSMVSV LNLADKRVLN 240 GFHNLEEQRI PVPFKGRENG DDCSSGSSVT VSNSMEEGGA TCSREPLMQS INGFASPLPC 300 LPGVPWNSAL LPPPFCPPGF PMSFYPHFWN CGIWNTPLLS PQSSSSSSNQ RAPSGNNSTL 360 GKHSRDRYTL KLDDFEKEEQ PTKLKNGCIL VPKILRIDDP TEAARSSIWA TLGIKNESFT 420 GEGLFKAFQP KTDERKHVAE TSPILLANPA AASRSINFNE NS*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MREDATTEPA IKLFGKKITL NTDGQPPLIS ADDLPSLERV EVVEEDDEKA EKDIPARIVP  60
DTAEENNVPL LGAEESADPE TNANPKTPSI NEESAKSKSS ETEKEQNYAS TPQEKILKKP  120
DKILPCPRCK SMDTKFCYFN NYNVNQPRHF CKACQRYWTA GGTMRNVPVG AGRRKNKNSA  180
SHYRHMTISE VLQAARIEAP NGTHNPALKT NGRVLSFGLD APICDSMVSV LNLADKRVLN  240
GFHNLEEQRI PVPFKGRENG DDCSSGSSVT VSNSMEEGGA TCSREPLMQS INGFASPLPC  300
LPGVPWNSAL LPPPFCPPGF PMSFYPHFWN CGIWNTPLLS PQSSSSSSNQ RAPSGNNSTL  360
GKHSRDRYTL KLDDFEKEEQ PTKLKNGCIL VPKILRIDDP TEAARSSIWA TLGIKNESFT  420
GEGLFKAFQP KTDERKHVAE TSPILLANPA AASRSINFNE NS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G091600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021614753.1	0.0	cyclic dof factor 3-like
Swissprot	Q8LFV3	1e-117	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A2C9VPE7	0.0	A0A2C9VPE7_MANES; Uncharacterized protein
STRING	cassava4.1_007172m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-105	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Manes.06G091600.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]