PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G091500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 359aa MW: 40518.6 Da PI: 6.4352 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.3 | 9.6e-24 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRrngilKKA+ELS+LCd+++ +++fs+tg+ Manes.06G091500.1.p 9 KRLESTSNRQVTYSKRRNGILKKAKELSILCDIDIVLLLFSPTGR 53 689****************************************96 PP | |||||||
2 | K-box | 16.9 | 2.6e-07 | 110 | 171 | 17 | 72 |
K-box 17 lqqelakLkkeienLq.....reqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnel 72 ++q ++kL ++++ Lq ++R +++L++ s+++L+q+e+ L++s+++i +K+++ Manes.06G091500.1.p 110 SSQTVEKLADQVRLLQaqlteIQNRMSYWNNLDKVdSIEHLNQMENSLKESINQIHLQKENI 171 5788999999999999888655557778******966899****************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.707 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-26 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-20 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-20 | 11 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-20 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-20 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KAKELSILCD IDIVLLLFSP TGRPTLFQGE 60 HSNFEDVFAK FAQLTPQERA KRKVESLEVL RKTFKKLDHD VNIQDFLGAS SQTVEKLADQ 120 VRLLQAQLTE IQNRMSYWNN LDKVDSIEHL NQMENSLKES INQIHLQKEN IGRCQLVPLE 180 CNSQFQNGMD LPTIINSMQE AQPLSWLPND SNQHLIISNE QNFLPQRDME GSTSTSLPGC 240 SGYYDPGKHS EIGNLGPVDN MGQDGGALCN LSSNTCLSVQ LDEQFSYHPF SSLNLPEVKK 300 MKPEMQMNSQ GDHSVYQVNG NFELTRPIYD NGHHTWGSAS GPCSVAMFSE NQYHQQAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-15 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-15 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-15 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-15 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-15 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-15 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-15 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-15 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-15 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-15 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G091500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021615575.1 | 0.0 | agamous-like MADS-box protein AGL65 | ||||
Refseq | XP_021615576.1 | 0.0 | agamous-like MADS-box protein AGL65 | ||||
Refseq | XP_021615577.1 | 0.0 | agamous-like MADS-box protein AGL65 | ||||
Swissprot | Q7X9I0 | 1e-104 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A2C9VPE4 | 0.0 | A0A2C9VPE4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_027107m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2750 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-106 | AGAMOUS-like 65 |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G091500.1.p |
Publications ? help Back to Top | |||
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