PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G083400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TCP
Protein Properties Length: 341aa    MW: 37976.2 Da    PI: 8.6715
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G083400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.24.4e-2852139366
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................s 66 
                          g+kdrhsk++T +g+RdRR+Rls+++a +++dLqd+LG+ ++sk i+WLl + k  i++l+ +                         
  Manes.06G083400.1.p  52 GGKDRHSKVSTVRGLRDRRIRLSVHTALQLYDLQDRLGLSQPSKVIDWLLDATKNDIDKLPPLqmlqgfgqfhdqqmllshqsnfanF 139
                          79*************************************************************6666665444444444332222221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.60553111IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-2653149IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MITGSREKIF QAKQEGDAAG DSSFSKAATS TSSRKWSAFR NPRIVRMPRS FGGKDRHSKV  60
STVRGLRDRR IRLSVHTALQ LYDLQDRLGL SQPSKVIDWL LDATKNDIDK LPPLQMLQGF  120
GQFHDQQMLL SHQSNFANFF DPNSDGGYHQ DTVAAEASLR SGEVEISVAE KGKWIKTNEQ  180
ENQEYGFCNY TTAGQVSAQK LFPLTSSNTH SSLPGLPNNS YFHWDTSNLS SSHQFQTHGF  240
VHHTETSLKD TVSSPPSLPF SSASQFFFCP PVTMASLFQQ YPPYATTPLE SESKEINHFQ  300
LLNSGSQHIL PNSRATNLPM RNLSLNVNPG FAHLHQSNNV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1958112155Putative transcription factor PCF6
5zkt_B8e-1958112155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G083400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616842.10.0transcription factor TCP5-like
TrEMBLA0A2C9VP200.0A0A2C9VP20_MANES; Uncharacterized protein
STRINGcassava4.1_028058m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-48TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5