PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G081900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 184aa MW: 21308.9 Da PI: 9.7505 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.9 | 2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifs++gklye++s Manes.06G081900.1.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALIIFSTRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 82.1 | 1.3e-27 | 86 | 158 | 13 | 85 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 +++s +qe+ kLk++ e Lqr+qR+llG++L++L+ keL+qLe qLe+slk+iR +K++++l q+ +lq+k + Manes.06G081900.1.p 86 ETQSNHQEYLKLKARFEVLQRSQRNLLGDELGPLNTKELEQLELQLETSLKRIRFTKTQFMLHQLADLQNKVH 158 68999*****************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.548 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-33 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.31E-44 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 4.3E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.31 | 87 | 183 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.0E-22 | 87 | 158 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MGRGKVVLKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALIIFST RGKLYEFCST 60 SSMMRTLERY QKCSYGAMEA SYPGYETQSN HQEYLKLKAR FEVLQRSQRN LLGDELGPLN 120 TKELEQLELQ LETSLKRIRF TKTQFMLHQL ADLQNKVHTF FWGSAASFFL LCMQLLEFCV 180 ILG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 1e-27 | 75 | 156 | 1 | 86 | Developmental protein SEPALLATA 3 |
4ox0_B | 1e-27 | 75 | 156 | 1 | 86 | Developmental protein SEPALLATA 3 |
4ox0_C | 1e-27 | 75 | 156 | 1 | 86 | Developmental protein SEPALLATA 3 |
4ox0_D | 1e-27 | 75 | 156 | 1 | 86 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G081900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN297860 | 2e-58 | FN297860.1 Gerbera hybrid cultivar mRNA for GRCD4 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021616595.1 | 1e-109 | MADS-box protein CMB1-like | ||||
Swissprot | Q8LLR2 | 1e-88 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | A0A2C9VQD1 | 1e-132 | A0A2C9VQD1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033252m | 1e-110 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF229 | 32 | 178 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.3 | 1e-76 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G081900.1.p |
Publications ? help Back to Top | |||
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