PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G080600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Dof
Protein Properties Length: 328aa    MW: 35702 Da    PI: 7.1762
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G080600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.91.1e-383089261
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                         +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s
  Manes.06G080600.1.p 30 NHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRS 89
                         57899****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.9E-333288IPR003851Zinc finger, Dof-type
ProDomPD0074788.0E-283288IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6183488IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103672IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MQDIHSIGGG ARLFSAGGGD RRLRPHHHQN HQALKCPRCD SLNTKFCYYN NYNLSQPRHF  60
CKSCRRYWTK GGVLRNVPVG GGCRKTKRSK PKQPTSTADT SFTSTNTATT TTSATPPSQQ  120
QEQQRERKSS NSHSSSASSS LTATNTTAGN TGIEAVSAHS SCSASNNILH GIGESKLFAH  180
ANINPSFEPG LLQQGSDCGI FSDIGSFTSL ITSTNEQLHF GFSNILNQQN LDHVQENQNQ  240
QWQLPQQQQQ QMVDMSGEEI TGGLIDQTVH LELSALQSNT SGNGEFGPLD WQGAGGQCLF  300
DLPNAVDQAY WSQSHWTDQD PSSLYLP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00570DAPTransfer from AT5G60850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G080600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614624.10.0dof zinc finger protein DOF5.4-like
TrEMBLA0A2C9VP180.0A0A2C9VP18_MANES; Uncharacterized protein
STRINGcassava4.1_011733m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59983050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.16e-41OBF binding protein 4