PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G078000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bZIP
Protein Properties Length: 170aa    MW: 19573.9 Da    PI: 6.8015
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G078000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.87.3e-1683141563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN+ L+++l++l++  +++ +e+
  Manes.06G078000.1.p  83 RKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLIDKLNHLSECHDRVLQEN 141
                          79***********************************************9888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-1679143IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.95581144IPR004827Basic-leucine zipper domain
PfamPF001701.9E-1383141IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.6E-1383156No hitNo description
SuperFamilySSF579591.44E-1383132No hitNo description
CDDcd147023.25E-2084135No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MVPSELAGIH YLAAENPIQF AANFGLIDQS NMPTFHFNRI LSNFHNPLFP QHVHEFTPQS  60
SSLSNNSTSD EAEENQLSII DERKQRRMIS NRESARRSRM RKQKHLDELW SQVVRLRTEN  120
HNLIDKLNHL SECHDRVLQE NAKLKEEASD LRQMLTDLQI GSPFTTSAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G078000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616870.11e-122basic leucine zipper 43-like
SwissprotQ9FMC22e-39BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A2C9VR731e-121A0A2C9VR73_MANES; Uncharacterized protein
STRINGcassava4.1_026563m1e-122(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.16e-46basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]