PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G072800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TCP
Protein Properties Length: 417aa    MW: 47024.8 Da    PI: 10.0582
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G072800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP151.84.3e-471152722133
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaessss 80 
                           gkkdrhskihT++g+RdRR+Rls+++a++fFdLqd+LGfdk+skti+WL+ ++k++ikelt++           s        +++s+ 
  Manes.06G072800.1.p 115 SGKKDRHSKIHTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIDWLFSKSKAEIKELTDSlsrprvkrttsS-------GDGQSVP 197
                          68**************************************************************766655543220.......3333333 PP

                  TCP  81 sasnsssg.......................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                          s+s+s+                           + + +k +k++++++  + l kesr+karararert+ek++ik
  Manes.06G072800.1.p 198 STSESEVMssgirltpdhgdkgeiivednsfV-SITRQKMSKKSNKPSLINPLVKESREKARARARERTKEKQKIK 272
                          33333332555557777778889999987632.33333666777777778999********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-45116270IPR005333Transcription factor, TCP
PROSITE profilePS5136936.935117175IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.397251268IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MYSSSSNCYP FQYTQNQIDI TSLIPEDQLF SPFLHLPSSY LDHGDFLPSD FLTHHYHQLQ  60
QQQQQQILGS NANLEAETIQ EMNPSANLKR ATRSNNKKKR SNMNGTKQPV PRKRSGKKDR  120
HSKIHTAQGP RDRRMRLSLQ IARKFFDLQD MLGFDKASKT IDWLFSKSKA EIKELTDSLS  180
RPRVKRTTSS GDGQSVPSTS ESEVMSSGIR LTPDHGDKGE IIVEDNSFVS ITRQKMSKKS  240
NKPSLINPLV KESREKARAR ARERTKEKQK IKGFDKCNHY SQANPNNLEQ LGPARSLENG  300
ENLGFGDHEM KPLLMVAGEE DHQEPRTYLM QHQTNSVSIV DKTFGLTGPS KSSSIFDLPH  360
NFVVPSASGA DFEDEFSGLT GNWDISNARV QNRFCAVPSM KLSRGNIQYK TLGKFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G072800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616903.10.0transcription factor TCP12-like
TrEMBLA0A2C9VR250.0A0A2C9VR25_MANES; Uncharacterized protein
STRINGcassava4.1_032548m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.19e-31TCP domain protein 12