PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G071600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 289aa    MW: 31871.8 Da    PI: 7.6714
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G071600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05111130120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C  C+k+Fsr  n++ H+
  Manes.06G071600.1.p 111 FSCALCNKTFSRYNNMQMHM 130
                          89*****************9 PP
2zf-C2H213.90.00015196218123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +Cgk+F  + + ++H +++
  Manes.06G071600.1.p 196 FGCRKCGKPFAVRGDWRTHEKNC 218
                          56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.6E-5107133No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5111130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.408111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576672.85E-6181216No hitNo description
Gene3DG3DSA:3.30.160.607.4E-6182216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MQTPSFTYTS SSASVCIEAD GQEVDEDSLF LSLGPPGQSI AKLPNYLPCL NENKQQIEQN  60
PTSESGVTVA LHIGPPTTGA SISNPNHIGS LVEGQYWIPS PAQILVGPTQ FSCALCNKTF  120
SRYNNMQMHM WGHGSQYRKG PESLRGTKQV SSMLKLPCYC CAEGCKNNIE HSRSKPLKDF  180
RTLQTHYKRK HGEKPFGCRK CGKPFAVRGD WRTHEKNCGK FWLCICGSDF KHKRTLKDHV  240
RAFGDGHAPH TVKVSEVEEE QKEKEEDGDG DNNIDQGDSG GGHGLVFL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G071600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614528.10.0zinc finger protein WIP6-like
SwissprotQ9FX681e-117ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2C9VNL30.0A0A2C9VNL3_MANES; Uncharacterized protein
STRINGcassava4.1_023727m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-119C2H2-like zinc finger protein