PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.06G070900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bZIP

Protein Properties

Length: 453aa MW: 50082.2 Da PI: 6.6981

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G070900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.2	2.3e-10	169	198	5	34
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34 k rr+++NReAAr+sR+RKka++++Le+ Manes.06G070900.1.p 169 KTLRRLAQNREAARKSRLRKKAYVQQLETS 198 788************************984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.9E-8	165	256	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.5E-8	165	212	No hit	No description
PROSITE profile	PS50217	9.301	167	211	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.90E-22	169	221	No hit	No description
SuperFamily	SSF57959	1.61E-6	169	211	No hit	No description
Pfam	PF00170	5.5E-7	169	206	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	172	187	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.7E-30	251	324	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MQSFKHLPPP EMYCHSSFFL RGEDGSRNQA RFRYLGELDQ TASAFHPDDA IDLSPNSMFS 60 LKSGNVAVLS NNFNYDPALN TSIGSAEIAT TGTGCLDTGQ YMHPKGTTIV SSLGNGHSIE 120 NWGHSGMADN GQQTDTSTDV DTDDRNQLHG VQHGPVVVVD SRPKTGDQKT LRRLAQNREA 180 ARKSRLRKKA YVQQLETSRL RLAQLEQELQ RAQQQGVFVA TGFSGDHGSG NGVVVFDMEY 240 AHWLEEHQRL ISDLRAAVSS HMGDNELHLH VDGVMAHYDE IFRLKSIGTK ADVFHMLSGM 300 WKTPAERCFM WLGGFRSSEL LKILGNHLEP LTDQQIMGIC NLQQSSQQAE DALSQGMEAL 360 QQSLVDTLSS TSLGFAGSGN VADYMGQMAI AMGKLATLEN FLHQADLLRQ QTLQQMRRIL 420 TTRQAARALL VFGDYASRLR ALSSLWLARP RD*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MQSFKHLPPP EMYCHSSFFL RGEDGSRNQA RFRYLGELDQ TASAFHPDDA IDLSPNSMFS  60
LKSGNVAVLS NNFNYDPALN TSIGSAEIAT TGTGCLDTGQ YMHPKGTTIV SSLGNGHSIE  120
NWGHSGMADN GQQTDTSTDV DTDDRNQLHG VQHGPVVVVD SRPKTGDQKT LRRLAQNREA  180
ARKSRLRKKA YVQQLETSRL RLAQLEQELQ RAQQQGVFVA TGFSGDHGSG NGVVVFDMEY  240
AHWLEEHQRL ISDLRAAVSS HMGDNELHLH VDGVMAHYDE IFRLKSIGTK ADVFHMLSGM  300
WKTPAERCFM WLGGFRSSEL LKILGNHLEP LTDQQIMGIC NLQQSSQQAE DALSQGMEAL  360
QQSLVDTLSS TSLGFAGSGN VADYMGQMAI AMGKLATLEN FLHQADLLRQ QTLQQMRRIL  420
TTRQAARALL VFGDYASRLR ALSSLWLARP RD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G070900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021616779.1	0.0	transcription factor TGA2.3-like
Swissprot	Q9SX27	1e-174	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A2C9VQR2	0.0	A0A2C9VQR2_MANES; Uncharacterized protein
STRING	cassava4.1_008770m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-145	bZIP family protein

Link Out ? help Back to Top
Phytozome	Manes.06G070900.1.p

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]