PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G068600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | CO-like | ||||||||
Protein Properties | Length: 456aa MW: 51306.4 Da PI: 6.4608 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.4 | 1.6e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC++C ++ H+ H++v Manes.06G068600.1.p 16 ARACDSCIRKRARWYCAADDAFLCQSCDSSVHSAnplasrHERV 59 578*****************************668888888876 PP | |||||||
2 | CCT | 67.9 | 2.7e-23 | 400 | 443 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a Manes.06G068600.1.p 400 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 443 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.893 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.4E-11 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.7E-8 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.56E-9 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 400 | 442 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.8E-18 | 400 | 442 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MISYKNVANA VGGKTARACD SCIRKRARWY CAADDAFLCQ SCDSSVHSAN PLASRHERVR 60 LKTASLKSLD LVSKEKCVPS WHRGFTRKAR TPRHGKPVSH SKIVEKLRNP VPLVPEVGSD 120 EISHEETEEE QLLYRVPTFD PYVAQLCSSA TISNNEAETT TAGGNYSDQT VAEAHGIESK 180 ASLDAGGQDV LHGFLPSDMD LAQFAEDVES LLGRGLENES FGMEGLGLMS CKEEKELQRE 240 YYPAREKVKL EDEQQIAAQK EEKIVRECHV DTDEIEMARE PPFELSFDDD SGTCGEEDEK 300 VRIRQNDSKN NEEYEDDDEN LTKKKKKRKI LLSLDYEAVI TAWASQRSPW TTGNRPDVDP 360 DECWPEYCMG ICGGELHHHG YGDHPSGVGL QHPAMGDGGR EARVSRYREK RRTRLFSKKI 420 RYEVRKLNAE KRPRMKGRFV KRASFAAPAF PLHAK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 322 | 328 | KKKKKRK |
2 | 323 | 328 | KKKKRK |
3 | 410 | 426 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G068600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU229365 | 4e-46 | CU229365.1 Populus EST from mild drought-stressed leaves. | |||
GenBank | CU231014 | 4e-46 | CU231014.1 Populus EST from mild drought-stressed leaves. | |||
GenBank | CU231559 | 4e-46 | CU231559.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021616374.1 | 0.0 | zinc finger protein CONSTANS-LIKE 6-like | ||||
TrEMBL | A0A2C9VNJ7 | 0.0 | A0A2C9VNJ7_MANES; Uncharacterized protein | ||||
STRING | POPTR_0008s11930.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-103 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G068600.1.p |