PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G068500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 240aa MW: 26173.7 Da PI: 4.92 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.1 | 3.7e-30 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++dC+++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ Manes.06G068500.1.p 2 SCNGCRVLRKGCSDDCTIRPCLqwiksPDSQANATLFLAKFYGRAGLINLIEAGPQHLRPAVFRSLLYEACGRIVNPVYGSVGLLWSGNW 91 6***************************************************************************************** PP DUF260 86 qleqlkaelallke 99 +q++++++l+++ Manes.06G068500.1.p 92 VHCQAAVDAVLRGT 105 ******99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.096 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDDCTIR PCLQWIKSPD SQANATLFLA KFYGRAGLIN LIEAGPQHLR 60 PAVFRSLLYE ACGRIVNPVY GSVGLLWSGN WVHCQAAVDA VLRGTPIMQM PSAPDAPPPN 120 LIDPLKTYDI RHVSKDHNSL ELNKVNNQTR FKSPVIKPSS PSDSMCRFNL GELSFEPLGE 180 PWLSQLTNGD SSRDDESMFS VETVEEDPGE PNYGLKSNSP SDDGDEIGLD LTLGLVPVK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G068500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021617086.1 | 1e-177 | LOB domain-containing protein 42-like | ||||
Swissprot | Q9CA30 | 4e-77 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A2C9VNP4 | 1e-176 | A0A2C9VNP4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028798m | 1e-177 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-79 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G068500.1.p |