PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G066700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 26775 Da PI: 7.744 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.3 | 3.3e-09 | 126 | 173 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ +L+ l+P + k + a +L ++Y++sLq Manes.06G066700.1.p 126 SHSLAERVRREKINEKLKNLQNLVPGC----YKTMGMAVMLDVIINYVQSLQ 173 8*************************8....355888888888888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.33E-11 | 120 | 177 | No hit | No description |
SuperFamily | SSF47459 | 8.9E-17 | 120 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 122 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.262 | 122 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-6 | 126 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-8 | 128 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:2000488 | Biological Process | positive regulation of brassinosteroid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MAYKLTENLQ NLKPSFSGLD SSNLLLIDHK ALENFRSTDD QDQFVDFSYG RSFTNHQQQS 60 YLPMNLANNI QSSLHVSPAA AVSGTGQSEN IKSFGGRKRK RKDEKDLQKP TEVVHVRAKR 120 GQATDSHSLA ERVRREKINE KLKNLQNLVP GCYKTMGMAV MLDVIINYVQ SLQNQIEFLS 180 MKLSAASMYY DFNLENDNII ETTQGTNAYE VQQMERIGRE GYGEASNYFH SAWFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 101 | RKRKRK |
2 | 96 | 102 | RKRKRKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G066700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021617081.1 | 1e-177 | transcription factor bHLH75-like | ||||
Swissprot | A4D998 | 3e-53 | BH075_ARATH; Transcription factor bHLH75 | ||||
TrEMBL | A0A2C9VNM3 | 1e-176 | A0A2C9VNM3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033904m | 1e-129 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14813 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25330.1 | 1e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G066700.1.p |
Publications ? help Back to Top | |||
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