PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G060000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | G2-like | ||||||||
Protein Properties | Length: 480aa MW: 52383.2 Da PI: 7.688 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.3 | 6.2e-32 | 258 | 313 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Manes.06G060000.1.p 258 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 313 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.045 | 255 | 315 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.41E-17 | 256 | 316 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-28 | 256 | 316 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-26 | 258 | 313 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.5E-7 | 260 | 311 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MASPSELTLD CKPHSYSMLL KSFGDQNDHQ TQKLEEFLSR LEEERLKIDA FKRELPLCMQ 60 LLTNAVETSR QQLQSYRANQ GPRPVLEEFI PLKNSTSETL DNSSNISDKA NWMTTAQLWS 120 QESNETKLQT TLNTFPKKTN IGFSVSPKIS LDTKQRNGGA FLPFSKERNL CPSPILALAS 180 TEPEMEDQKC LETENGFSCP KRGNSEKIGN NNGGVVVIEQ GKGTGNSSSD GQATNTGTGN 240 CTNNTTTSTT TSSQAHRKAR RCWSPDLHRR FVNALQMLGG SQVATPKQIR ELMKVDGLTN 300 DEVKSHLQKY RLHTRRPSPS PQATGAPARL VVLGGIWVPP EYATAAAAAH TGAPTLYGAH 360 PASHAPPPHF CAAPPMPQDF YTTAAAAAPS SPQPTHHQMH HHHHTLHQLH MYKATSQAHS 420 SPESDVRGGD RSESIEDGKS ESSSWKSGEN GGDRKGLASL REDGDDSNGS EISLKPLRY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-13 | 258 | 311 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-13 | 258 | 311 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-14 | 258 | 311 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-14 | 258 | 311 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-14 | 258 | 311 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-14 | 258 | 311 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-13 | 258 | 311 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-13 | 258 | 311 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-13 | 258 | 311 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-13 | 258 | 311 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-13 | 258 | 311 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-13 | 258 | 311 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G060000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021615103.1 | 0.0 | myb family transcription factor EFM-like | ||||
Swissprot | Q9ZQ85 | 1e-131 | EFM_ARATH; Myb family transcription factor EFM | ||||
TrEMBL | A0A2C9VPT3 | 0.0 | A0A2C9VPT3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028489m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5466 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-105 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G060000.1.p |
Publications ? help Back to Top | |||
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