PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G032500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 351aa    MW: 40024.3 Da    PI: 6.7943
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G032500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.41.6e-124097156
                  AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                         s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++ge
  Manes.06G032500.1.p 40 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWGE 97
                         57*******************99998898888888********************997 PP
2AP251.33e-16139190155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Manes.06G032500.1.p 139 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 190
                          89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-1540106IPR016177DNA-binding domain
PfamPF008471.2E-84097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1241105IPR001471AP2/ERF domain
PROSITE profilePS5103218.66341104IPR001471AP2/ERF domain
SMARTSM003804.0E-2041110IPR001471AP2/ERF domain
PRINTSPR003673.9E-64253IPR001471AP2/ERF domain
CDDcd000181.99E-24139200No hitNo description
SuperFamilySSF541719.81E-18139200IPR016177DNA-binding domain
PfamPF008475.4E-12139190IPR001471AP2/ERF domain
PROSITE profilePS5103218.334140198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17140199IPR001471AP2/ERF domain
SMARTSM003801.2E-24140204IPR001471AP2/ERF domain
PRINTSPR003673.9E-6180200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGKLAQQNQK SSANNNNNGV TKVKRTRRSV PRDSPPQRSS IYRGVTRHRW TGRYEAHLWD  60
KNCWNESQNK KGRQGAYDDE EAAAHAYDLA ALKYWGEDTI INFPLSTYEN ELKEMEGQSR  120
EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAATA  180
YDMAAIEYRG LNAVTNFDLS RYIKWLKPNQ NDNTTANNND LFHPNPNLNI PTHSTPIPNQ  240
DLGLSFLQNQ QAFQTTSSET VPMEPRPTNA TSALGLLLQS SKFKEMMEMT SMTDCPSSHV  300
DQLDPPQCRF PEDIQTYFEC QDLTNNYGEG DDMIFAELNS FVPQMFQSDL *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G032500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616513.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-112AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2C9VP070.0A0A2C9VP07_MANES; Uncharacterized protein
STRINGcassava4.1_022021m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-100ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]