PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.06G001800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 406aa MW: 44728.8 Da PI: 7.6304 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.8 | 4.5e-32 | 232 | 285 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Manes.06G001800.1.p 232 PRMRWTSSLHSRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 285 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-15 | 229 | 286 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 230 | 286 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.8E-24 | 232 | 285 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-7 | 233 | 284 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 406 aa Download sequence Send to blast |
MSHKGGIFHS QSLNQIPDLS LHISLPNRTP SSICTATNDD ADDSTFDVWS KDDSLKPHKD 60 SSIKVGSLPD ETIDLTLAAN PAATIALQVE SPWRRISYAG GGGGSQADQR NNVLLQRSNG 120 GSMSQLDRGI SGFKPIKGFP VYSCWNINSG EMDPRFCFNQ IPYPSSCTPY SSPGDTCSSF 180 PAYRMAAPSV RPQFQYHQYG GGVVGGAEVY GGGMIRSRFT PKLQNKRNMR APRMRWTSSL 240 HSRFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTVKSTD KPAASSDGSA 300 DEDFLSVTTP INQISNHKTS SCVSLQHDDG YTTSSTPWIN SSRERWVQSS SRDMEGLRPP 360 QNQLSHQAFE ESEIRSFRSV CNQLLETPSL EFSLGRPDWQ SKLHD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-17 | 233 | 287 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 233 | 287 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 233 | 287 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 233 | 287 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.06G001800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021615100.1 | 0.0 | transcription repressor KAN1-like isoform X4 | ||||
TrEMBL | A0A2C9VLG3 | 0.0 | A0A2C9VLG3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_011084m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1756 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16560.1 | 4e-59 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.06G001800.1.p |